Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq30410 125 2e-24 seq13007 120 8e-23 >seq30410 Length=1798 Score = 125 bits (138), Expect = 2e-24 Identities = 188/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 35326 GCTAAGCAACAGTGGATTGAGTTTGAATACCATAACCTCGACAGGTTTGAAGAAATATTC 35385 ||||| ||||| |||||||||||||| || || ||||| ||| | ||| || || | Sbjct 1531 GCTAAACAACAATGGATTGAGTTTGAGTATCACAACCTAGACCGTTTTACCGAGATTTGG 1590 Query 35386 ATTTCGATGGACGGTGATGATGTTGGTCGTGAAGCTGCAAGGGAAATCGCAAGCCGACTC 35445 | || |||| | ||| || || || || || || |||| || || || | ||||| Sbjct 1591 CTGTCACTGGATGCTGACGAAGTAGGGCGAGAGGCAGCAAAAGAGATTGCTAATCGACTT 1650 Query 35446 GGTGAACATCGCTGCCGTCTGGTTACACTGCCGCACAAAGATATCAACGAATGCCTGATG 35505 |||||| |||| || || || ||| |||||||| | |||||||||||||||||||| | Sbjct 1651 GGTGAATATCGTTGTCGCCTTGTTTCACTGCCGAAAAAAGATATCAACGAATGCCTACAG 1710 Query 35506 AACGGCGTCGCTGAGGATGAAATCTGGCAGTACATCGGTACAGCGTCATATTTCGACCCC 35565 || | | | || |||||| ||||| | | || || | || || ||||| Sbjct 1711 GCTGGAATTACCCAAGAAGAAATCATTAAGTACCTTGAAACCGCAACCTACTTTGACCCT 1770 Query 35566 GAAGAGCTTTACAGCGCCCGTGAGTTT 35592 || ||| | | ||| ||||| |||||| Sbjct 1771 GATGAGTTATGCAGTGCCCGCGAGTTT 1797 Score = 86.0 bits (94), Expect = 2e-12 Identities = 227/343 (66%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 34602 TGAGGTCAGCGTAATGACTCCAAGTGAACTGAGCGACCTGCTATGGGCGCAGGTTGACAG 34661 ||||| ||| ||||||| | |||||| || | || |||| | |||||| | Sbjct 750 TGAGGGAAGCTTAATGACAATTACGGAACTGTCAGATCGCCTTTGGGATGATGTTGACCG 809 Query 34662 GGTGGCTCCGCACCTGTTGCCAAACGGCAAGAAAGATGGGCAT---GAGTGGGTTGCCGG 34718 ||||| | | | ||||| |||||||| ||||| |||| |||||||| || || Sbjct 810 AGTGGCGAAGTATTTATTGCCTAACGGCAAAAAAGA---GCATAACGAGTGGGTAGCTGG 866 Query 34719 CAACGTCAACGGTGACAAGGGGAACAGCCTTAAGGTTAACCTTAGCGGTAAGAAAAAATG 34778 || || ||||| || || ||| | || | |||||| || || | | || Sbjct 867 TTCGGTAAATGGTGAATCAGGTAAGAGCTTAAAAATAAACCTTTCAGGAAAAAGAGTTTG 926 Query 34779 GGCTGATTTCGCTGAGGGCGACGGCGGTGACATGCTTGATTTGTGGATGGCCTGTCGGGG 34838 | |||||||||| ||||| ||| || ||| | || ||||||||| | | || ||| Sbjct 927 GTCTGATTTCGCAGAGGGGATCGGGGGCGACTTACTGGATTTGTGGGTTGAG-GTTAGGG 985 Query 34839 AATAAATCT-GCATCAGGCTATGCAGGAGGCAAAGGCATTTCTCGGTATCAAGGATGATG 34897 | | | || ||| || |||||| ||||| ||| | ||| || || | ||||||| Sbjct 986 ATTGCAGCTTGCACCAAGCTATGACCGAGGCGAAGCAGTATCTAGGCATTCATGATGATG 1045 Query 34898 ATCACCATTTCGACGCCAGACGTGAGAAGAAATTTTCCAGACC 34940 |||| || ||| |||| ||||||||||| | |||| Sbjct 1046 ATCATCACTTCTCAGCCAAGATCCAGAAGAAATTTAGCCGACC 1088 >seq13007 Length=9541 Score = 120 bits (132), Expect = 8e-23 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 21700 CATATTTGTGACATCATCACTGAAAATCGA--GTCAATTTGCTTCGCGTGTTCCGTTAAA 21757 |||||||||| |||| | ||| | | | ||| || | | | || ||||| |||| | Sbjct 9350 CATATTTGTGTCATCGTG--TGACATTAGCTCGTCGATCTTCATTGCATGTTCAGTTAGA 9407 Query 21758 TGATTCGGCGCAAGGTGAGCATATCGGCGCACCATATCGATGCTCTCCCATCCTCCCATT 21817 ||||||||||| | |||||||| | | |||||| || || ||||||||||||||| Sbjct 9408 TGATTCGGCGCTAAATGAGCATACCTTCTCACCATTTCTATTGATTCCCATCCTCCCATT 9467 Query 21818 TCCTGCAGAACAGAAAGCGGCACTCCGGACTGAATTAGCCAACTGGCCCACGTGTGCCTC 21877 || || || |||| | || ||||||||||||| |||||||| ||||| || |||||| Sbjct 9468 TCTTGAAGTGCAGATAATGGAACTCCGGACTGAACAAGCCAACTCGCCCAAGTATGCCTC 9527 Query 21878 AGATCGTGGAAACG 21891 | || || || || Sbjct 9528 AAGTCATGAAATCG 9541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137475434482776