Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq15048 284 1e-71 seq3053 82.4 7e-11 >seq15048 Length=4365 Score = 284 bits (314), Expect = 1e-71 Identities = 946/1456 (65%), Gaps = 38/1456 (3%) Strand=Plus/Minus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293 ||||| |||||| ||| || | | || |||| ||||| || ||| ||| | Sbjct 2721 ATGCTAAGAGTTTTCAACAATGTGGCCCGCTACGTTGACCAAGGAGGCGGAAAAAGGCCT 2662 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 || || | || ||||| |||| || |||||| |||| | | || ||||| ||||| Sbjct 2661 GGAGCTTTTGCAATCTACTTAGAGCCTTGGCACTCTGATATTTTTGAGTTTTTGGATTTA 2602 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 || |||| ||| ||||||| | | ||| || ||||| || || ||||| ||| | Sbjct 2601 AAGAAAAACACGGGCAAGGAAGAACATAGAGCTCGTGATTTATTTTATGCTTTGTGGATT 2542 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 ||||||||||||||| ||| || ||| ||| | ||||| || ||||| || | Sbjct 2541 CCCGATTTGTTTATGAAACGAGTTGAAGCTAACGAAGATTGGTCCCTTATGTGCCCTCAC 2482 Query 123474 CGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATAC 123533 |||||| |||||| || |||| || | ||||| ||||| | |||| Sbjct 2481 AAGTGTCCTGGCTTGCATGAAGTTTGGGGTTCGGAATTTGAGACCTTGTATGAAAAATAT 2422 Query 123534 GAGCGCGAAGG-----CAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTA 123588 ||| || || | || || ||| | || | | | || ||| | Sbjct 2421 GAGAAAGAGGGACGCGCGAATAGAAAAGTAAAAGCCCAGTCCCT--TTGGTTTGCG---A 2367 Query 123589 TTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACA 123648 |||| || ||||||| ||||| || || || || ||||| |||||||| | ||||| | Sbjct 2366 TTATAGAGGCACAAGTGGAAACAGGTACCCCATATATGCTATACAAAGATTCATGCAATA 2307 Query 123649 GGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTA 123708 | |||| ||| || ||| | || || |||||||| |||||||| || | |||||| Sbjct 2306 GAAAAAGCAACCAACAAAACCTCGGTACTATAAAATGCAGTAATCTATGTACTGAAATTG 2247 Query 123709 TCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-- 123766 | ||||| | | ||| | | ||||| || || | ||||||||| || | || Sbjct 2246 TTGAATATTCGGCACCAGATGAGATAGCCGTTTGCAACCTCGCTTCGATT-GCTTTAAAT 2188 Query 123767 -TCGTTGCGTC----GAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAA 123821 | ||| | | || || | | ||| | || ||| | ||| | |||||| Sbjct 2187 ATGTTTGTGACAGCGGATAAAGTC---TTTGACTTTAAAAAATTAAAAGAGGTCACAAAA 2131 Query 123822 ACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCG 123881 | || |||||||| || ||||| || ||||| |||| |||||| || ||||| Sbjct 2130 ATAGTCACCAAGAATTTAAATAAAATAATTGATGTAAATTATTATCCATTACCCGAAGCA 2071 Query 123882 CGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCG 123941 || |||||| ||| ||||| | || | || |||||||| |||||||||| Sbjct 2070 AAAAAATCGAATTTGCGACATAGACCTATTGGTATTGGTGTTCAAGGGCTGGCCGACGCT 2011 Query 123942 TTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTT---AATACGCAA 123998 ||| | | || | || || ||||| || | || ||| ||| |||| |||| Sbjct 2010 TTTATTTTAATGAGATACCCTTATGAAAGTGAGAACGC---GTTTCTTTTGAATAAGCAA 1954 Query 123999 ATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAAAATTCA 124057 || ||||||||||||| ||||| |||||||| || || || || || ||||| | Sbjct 1953 ATCTTTGAAACAATTTATTTTGGCGCATTGGAGGCAAGTTGTGAGCTGGCAGAAAAATTT 1894 Query 124058 CGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACAT 124117 | | | || |||| || | || || || | ||| || || ||||||| || || Sbjct 1893 GGAC-CATATGAAACATATGACGGAAGTCCCGTCAGCAAGGGAATACTGCAGTATGATAT 1835 Query 124118 GTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGAC 124177 |||| | || || |||||||||||||| |||| | ||||||| | ||| || Sbjct 1834 GTGGGGAGTAACTCCTACAAATTTGTGGGATTGGATTGATTTAAAAAATAAAATAAAGAA 1775 Query 124178 GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAAT 124237 | ||| | | ||||| || | ||||| ||||| || ||| |||| || || || Sbjct 1774 ATATGGTATAAGGAACTCTCTACTTGTGGCACCAATGCCAACAGCATCCACCGCGCAGAT 1715 Query 124238 TTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTT 124297 ||| ||||| |||||||| || || |||| || ||| | ||| ||| ||||| || Sbjct 1714 TTTGGGAAATAACGAATCTTTTGAACCGTATACGTCAAATATTTACACGCGGCGAGTATT 1655 Query 124298 AGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTT 124357 | ||||| ||||||||| | || ||||| || | || | | || |||| Sbjct 1654 GTCGGGCGAATTTCAAGTGGTTAACCATCACTTACTAAGAGATCTAACCGAACTAGATTT 1595 Query 124358 GTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGC 124417 || |||||| | ||| |||||||| || | | |||| | | || |||| Sbjct 1594 GTGGGATGAACAAATGAAAAACGAAATAATATCTAGCCGTGGTTCCATTCAAAATATCGA 1535 Query 124418 TTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACG 124477 || || || || | | | || |||||||| || |||||||| | |||| Sbjct 1534 AAGTATACCACAAAACATACGGGATCTTTACAAAACTGTTTGGGAAATATCAGTTAAATC 1475 Query 124478 ATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGT 124537 | |||| |||||| | || |||| || | | |||||||| || || ||||| | Sbjct 1474 AACAATTTTAATGGCTGCTGATAGAGGAGCATTTATCGATCAAAGCCAGTCATTTAATAT 1415 Query 124538 GTTTGTAGCGGAACCCACCTACGCCCGCA-TGACCAGC-ATACACATGCACGCGTGGAGC 124595 ||| | || || | || | | | | | || | || || | ||||||| Sbjct 1414 TCATGTTGGAGAGCCAAATTATG--GGAAGTTAACATCGATTCATTTCTTTGCGTGGA-A 1358 Query 124596 AGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCA 124654 ||| || || ||||| || ||||||||| | ||||| ||||| || || |||||||||| Sbjct 1357 AGCTGGTCTAAAAACTGGAATGTATTACCTTAGAACTAAACCAGCAGCGAATGCCATTCA 1298 Query 124655 ATTTACCGTCGACAAA 124670 ||| || || |||||| Sbjct 1297 ATTCACGGTTGACAAA 1282 >seq3053 Length=25279 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || ||||| | ||||| |||||||| || ||||||||| ||| | | | ||| | Sbjct 10171 ACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCG--GACAATGTACGTCCATCTT 10114 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | ||||| ||||| || | || | ||||| || || || ||||| || ||||| || | Sbjct 10113 CTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCT 10054 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||| || ||| | || | ||||| |||| ||||| || | || | || | Sbjct 10053 GAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGTCT 9994 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||||||||| || ||||| Sbjct 9993 TCCCCGTGAGGGTTTTTACAAAGATCTGCAT 9963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451815810773360