Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_012741.1 Length=171451 Score E Sequences producing significant alignments: (Bits) Value seq3187 141 1e-28 >seq3187 Length=10884 Score = 141 bits (156), Expect = 1e-28 Identities = 138/176 (78%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 143014 CCGTAGTCCATATGACGAATACGGTTTTCATCGACACCTTTGTTGTTTTTCAGAACGAGC 143073 |||||||||||||| |||| ||||| | || || || |||||||||||| || | | Sbjct 7531 CCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAGGACTAAC 7590 Query 143074 AGATTTTCAACTTCCAAATGCCAAATAGG--ATAATAAGCAGTAGCAGCGCCGCCACGGA 143131 || |||||||||| | |||||||| || | |||||| |||||||| || ||||||| Sbjct 7591 AGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAG--GTAGCAGCACCACCACGGA 7648 Query 143132 TTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATA 143187 |||||||| || || |||||||| ||||||||||| || || |||| |||||| Sbjct 7649 CACCACCTTGAGAGCAAGATTTAACCGCAGTCTGGAAGTGCTTGTAGAACGGAATA 7704 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/148 (76%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 140951 ATATATTGGGTGCCT-TTAAG-GTGAAGCTGTTCATCACGTGCAATGAACTTCATAATCT 141008 |||| ||| |||||| ||||| || ||||| |||||||||||||| | ||| ||||| | Sbjct 5375 ATATGTTGAGTGCCTGTTAAGTGTAAAGCT--TCATCACGTGCAATCAGCTTGATAATTT 5432 Query 141009 TAGCATTACCTTCCATGATTTCCATATTCTTATGGAAGTTAAAGGTACATGCAAAAGATA 141068 |||||||||||||||| | | || |||| ||| || | ||| ||||| | Sbjct 5433 TAGCATTACCTTCCATTAGCT-CACGTTCT--GCGAATGCGAATGAACAGGCAAAGCTGA 5489 Query 141069 CATAAAAACGAATAGCTTCCAATGCGTT 141096 ||||||| || || ||||||| |||||| Sbjct 5490 CATAAAATCGGATTGCTTCCAGTGCGTT 5517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548287799310960