Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq30410 125 2e-24 >seq30410 Length=1798 Score = 125 bits (138), Expect = 2e-24 Identities = 188/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 33285 GCTAAGCAACAGTGGATTGAGTTTGAATACCATAACCTCGACAGGTTTGAAGAAATATTC 33344 ||||| ||||| |||||||||||||| || || ||||| ||| | ||| || || | Sbjct 1531 GCTAAACAACAATGGATTGAGTTTGAGTATCACAACCTAGACCGTTTTACCGAGATTTGG 1590 Query 33345 ATTTCGATGGACGGTGATGATGTTGGTCGTGAAGCTGCAAGGGAAATCGCAAGCCGACTC 33404 | || |||| | ||| || || || || || || |||| || || || | ||||| Sbjct 1591 CTGTCACTGGATGCTGACGAAGTAGGGCGAGAGGCAGCAAAAGAGATTGCTAATCGACTT 1650 Query 33405 GGTGAACATCGCTGCCGTCTGGTTACACTGCCGCACAAAGATATCAACGAATGCCTGATG 33464 |||||| |||| || || || ||| |||||||| | |||||||||||||||||||| | Sbjct 1651 GGTGAATATCGTTGTCGCCTTGTTTCACTGCCGAAAAAAGATATCAACGAATGCCTACAG 1710 Query 33465 AACGGCGTCGCTGAGGATGAAATCTGGCAGTACATCGGTACAGCGTCATATTTCGACCCC 33524 || | | | || |||||| ||||| | | || || | || || ||||| Sbjct 1711 GCTGGAATTACCCAAGAAGAAATCATTAAGTACCTTGAAACCGCAACCTACTTTGACCCT 1770 Query 33525 GAAGAGCTTTACAGCGCCCGTGAGTTT 33551 || ||| | | ||| ||||| |||||| Sbjct 1771 GATGAGTTATGCAGTGCCCGCGAGTTT 1797 Score = 80.6 bits (88), Expect = 7e-11 Identities = 226/343 (66%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 32561 TGAGGTCAGCGTAATGACTCCAAGTGAACTGAGCGACCTGCTATGGGCGCAGGTTGACAG 32620 ||||| ||| ||||||| | |||||| || | || |||| | |||||| | Sbjct 750 TGAGGGAAGCTTAATGACAATTACGGAACTGTCAGATCGCCTTTGGGATGATGTTGACCG 809 Query 32621 GGTGGCTCCGCACCTGTTGCCAAACGGCAAGAAAGATGGGCAT---GAGTGGATTGCCGG 32677 ||||| | | | ||||| |||||||| ||||| |||| |||||| | || || Sbjct 810 AGTGGCGAAGTATTTATTGCCTAACGGCAAAAAAGA---GCATAACGAGTGGGTAGCTGG 866 Query 32678 CAACGTCAACGGTGACAAGGGGAACAGCCTTAAGGTTAACCTTAGCGGTAAGAAAAAATG 32737 || || ||||| || || ||| | || | |||||| || || | | || Sbjct 867 TTCGGTAAATGGTGAATCAGGTAAGAGCTTAAAAATAAACCTTTCAGGAAAAAGAGTTTG 926 Query 32738 GGCTGATTTCGCTGAGGGCGACGGCGGTGACATGCTTGATTTGTGGATGGCCTGTCGGGG 32797 | |||||||||| ||||| ||| || ||| | || ||||||||| | | || ||| Sbjct 927 GTCTGATTTCGCAGAGGGGATCGGGGGCGACTTACTGGATTTGTGGGTTGAG-GTTAGGG 985 Query 32798 AATAAATCT-GCATCAGGCTATGCAGGAGGCAAAGGCATTTCTCGGTATCAAGGATGATG 32856 | | | || ||| || |||||| ||||| ||| | ||| || || | ||||||| Sbjct 986 ATTGCAGCTTGCACCAAGCTATGACCGAGGCGAAGCAGTATCTAGGCATTCATGATGATG 1045 Query 32857 ATCACCATTTCGACGCCAGACGTGAGAAGAAATTTTCCAGACC 32899 |||| || ||| |||| ||||||||||| | |||| Sbjct 1046 ATCATCACTTCTCAGCCAAGATCCAGAAGAAATTTAGCCGACC 1088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130946806771404