Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7146 167 4e-36 >seq7146 Length=6253 Score = 167 bits (184), Expect = 4e-36 Identities = 424/633 (67%), Gaps = 19/633 (3%) Strand=Plus/Minus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 |||||| | ||| ||||| ||||||||||| ||||| | | ||||| || || | Sbjct 5931 CCAGCAGACGGTCGGCCACGAATTCGATGTACTCGGACATCAGTTTGCAGTTCATGCCGA 5872 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 || | || || |||||||| | || ||||||| || |||| ||||||||| | Sbjct 5871 TCAAATTGACCGGCAGCGCTTCGGTGAGGAACTCCTGTTCGATCTTCACCGCTTCGTCGA 5812 Query 159864 CAATCTGCGA-GACACGTTCGTACCCCGGCT--TGCCCAAAATGTGGTCCTTAAACAGGA 159920 |||| ||| || |||||| | || ||| | | ||| || |||| | Sbjct 5811 TGATCT-CGATGATGCGTTCGCGGCTGGGACGCTGCACCAGATG-----CTGGAACATCA 5758 Query 159921 GGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGA 159980 |||| || || || || ||||| |||||||| || ||||| ||||||||||| | | ||| Sbjct 5757 GGCAGGCGAAATCACAATGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGGAGAAGGTGA 5698 Query 159981 GGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAA--GCACCGCTAAA 160038 |||| ||||||| || ||| || ||||| || || | || ||| || ||| || Sbjct 5697 GGCCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATCGAGGCGAAACTGC-CCGAGAAG 5639 Query 160039 AAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTC 160098 ||| || ||||| ||||| || ||||| | || | |||||| || ||| | || Sbjct 5638 AAA-ATGCCCTCGACGGCGGCGAACGCAATGATGCGCTCACCGAAGTTGGC--CGACTTC 5582 Query 160099 ATG--GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACG 160156 | | |||| | ||||| || |||||||| || ||||| ||||| Sbjct 5581 GAGGAGATCCATGCCATCGCCCAGTCGGCCTTCTTCTTGACCGCCGGCAATGTTTCGACC 5522 Query 160157 GCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAG 160216 || || |||| |||| ||| | | |||| |||| || ||||||| | | Sbjct 5521 GCATTGAACAGGAAGTCCCGCTGATGCGGATCCCTGATGTAGGTGTCAATCAGAATGCTG 5462 Query 160217 TACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC 160276 ||||| || | ||| ||||| || ||||| ||||| ||| |||||| | ||||| | Sbjct 5461 TACATCTCCGAGTGGACATTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCT-C 5403 Query 160277 AGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGC 160335 | || |||||||| || |||| | | ||||||| | || || | || |||| Sbjct 5402 TGTCACTTGCACCTCTTGGCTGAAACGCTCCACCAGATTCTCGTTGACAATGCCATCGGA 5343 Query 160336 GGCCGCAAAGAAAGCCAACACGTGAGAGATGAA 160368 ||| || ||||| |||| |||||| || ||||| Sbjct 5342 GGCGGCGAAGAAGGCCAGCACGTGCGAAATGAA 5310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794825548532960