Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3053 98.7 7e-16 >seq3053 Length=25279 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||| ||| || || || ||||| || |||||||||| | Sbjct 10189 CCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGAC 10130 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || ||||| || || ||||||||| ||| || ||||| | || Sbjct 10129 AATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGA 10070 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || ||| | || | | |||||| | ||| || Sbjct 10069 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACC 10010 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGT 39726 || || || || || || ||||| | |||||||| ||||||||||| | |||| Sbjct 10009 TCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCATTTTGTGT 9956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347229189516878