Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7146 417 8e-112 seq31959 114 1e-20 seq3053 93.3 4e-14 >seq7146 Length=6253 Score = 417 bits (462), Expect = 8e-112 Identities = 549/768 (71%), Gaps = 40/768 (5%) Strand=Plus/Minus Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| ||||| ||||| | |||||||||||| |||||||| | ||||| || ||| || Sbjct 5939 CAGTTCGACCAGCAGACGGTCGGCCACGAATTCGATGTACTCGGACATCAGTTTGCAGTT 5880 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | || | || | |||||||||||||||||||| || || ||||| ||||| Sbjct 5879 CATGCCGATCAAATTGACCGGCAGCGCTTCGGTGAGGAACTCCTGTTCGATCTTCACCGC 5820 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACAT 132890 ||| || ||| || | | ||| | ||| || || ||||||| ||||| |||||| Sbjct 5819 TTCGTCGATGATCTCGATGATGCGTTCGCGGCTGGGACGCTGCACCAGATGCTGGAACAT 5760 Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| || || || ||||||| ||||||||| | || || | |||||| ||| || Sbjct 5759 CAGGCAGGCGAAATCACAATGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGGAGAAGGT 5700 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | |||||||||||||||||| || || ||||| || || | ||||||||||||||| || Sbjct 5699 GAGGCCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCCGAGAA 5640 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||| | |||||||||||| ||||| || | | |||||| ||||| |||| || Sbjct 5639 GAAAATGCCCTCGACGGCGGCGAACGCAATGATGCGCTCACCGAAGTTGGCCGACTTCGA 5580 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 || |||||| || |||||| |||||||| | ||||| ||||| ||||||| || Sbjct 5579 GGAGATCCATGCCATCGCCCAGTCGGCCTTCTTCTTGACCGCCGGCAATGTTTCGACCGC 5520 Query 133131 GTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAA 133188 || ||| | | ||| | || | ||| | | | ||||||||| || || | Sbjct 5519 ATTGAAC--AGGAAGTCCCGCTGATGCGGATCCCTGATGTAGGTGTCAATCAGAATGCTG 5462 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 ||||| |||||||| || |||||||||||||| || |||||||| ||||| |||||||| Sbjct 5461 TACATCTCCGAGTGGACATTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCT 5402 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 ||| ||||| ||||| ||||||||| |||||||| |||||||| ||||| ||| | Sbjct 5401 GTCACTTGCACCTCTTGGCTGAAACGCTCCACCAGATTCTCGTTGACAATGCCATCGGAG 5342 Query 133309 GCGGCGAAAAAGGCCAGCACGTGC---------TTG------------------------ 133335 |||||||| ||||||||||||||| | | Sbjct 5341 GCGGCGAAGAAGGCCAGCACGTGCGAAATGAAGTNGGCGGCGAAGAAGGCCAGCACGTGC 5282 Query 133336 ---ATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGG 133392 ||||| || |||||||||||| | | || ||||||||| | |||||||||| ||| Sbjct 5281 GAAATGAAGTGACGCTCGTTGTCGGTGAGCCGTTCCCAGTCGGTCATGTCCTTGGAGAGG 5222 Query 133393 TCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATA 133440 |||||||| || || |||||||| || || || || | | || | ||| Sbjct 5221 TCCACCTCTTCAACCGTCCAAAATGAGGCTTCAGCCTGTGTGCAAATA 5174 >seq31959 Length=2257 Score = 114 bits (126), Expect = 1e-20 Identities = 134/179 (75%), Gaps = 9/179 (5%) Strand=Plus/Plus Query 107631 CTCACCTCGGTGAGCGCGTCGCGGCCCGCCGACTTGAGGTTGCCCAGGTCGCCGACGTGC 107690 ||||||| |||| | || |||| || ||| | || ||||||||||||||||| || Sbjct 759 CTCACCTTGGTGGGGGCATCGCCGCTGGCC---TCGATGTTGCCCAGGTCGCCGAGATGG 815 Query 107691 CTGATCTCGGCGTCGGGCGCGCCGTGGTCGCGCTT---CGTCGGGTTGAAATGCTCGCCG 107747 | |||| || ||| |||||||| || ||| | ||||||||| || |||| Sbjct 816 CGCTCCTCGTCGGTGGGGGCGCCGTGCTC---CTTGCCCAGCGGGTTGAAGTGGGGGCCG 872 Query 107748 GCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTCGTGCACGTGGAAGCCGTGCAGGCC 107806 || || ||||||||||| | |||||||||||||||||| |||||||||||||| || Sbjct 873 GCGGAGATGCAGCCGTTGGTGTTGTCGCCGAACTCGTGCACATGGAAGCCGTGCAGCCC 931 >seq3053 Length=25279 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || |||||||| |||||||| || ||||||||| | || ||||| | Sbjct 9960 AAAATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAACCT 10019 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | |||| || || | ||||||||||||||||| | || Sbjct 10020 TCGGACACAATCGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 10079 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || || |||| || || || || | || || | || || | ||| || Sbjct 10080 CAACAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACATTGTCCGATTAT 10139 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||||| | || | ||| |||| || ||| Sbjct 10140 AACATTCAAAAGGAGTCAACATTACATCTGGTTCTTCGT 10178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499965440861440