Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq3187 129 7e-25 seq27670 96.9 4e-15 >seq3187 Length=10884 Score = 129 bits (142), Expect = 7e-25 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 41282 TGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCTGGAAACATATCCAAACCGCTG 41340 ||| ||||||||| | || || || ||| ||||| |||| || || |||| || || | Sbjct 7731 TGGCGGTGAAGCTTTCCACACAGGCTGT-ATTCCGTTCTACAAGCACTTCCAGACTGCGG 7673 Query 41341 TTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCT 41400 ||||||| || || || ||||| || |||||||||||||| || | | ||| || | | Sbjct 7672 TTAAATCTTGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTT 7613 Query 41401 GGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACC 41460 |||| || |||||||||| ||| | || |||| |||||| || || |||| |||| Sbjct 7612 GGCACCTTGAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACC 7553 Query 41461 GCGTTCGTCATCTTGATTACGGTGTACA 41488 | ||||| ||| | || |||||||| || Sbjct 7552 GAGTTCGCCATATGGACTACGGTGTGCA 7525 >seq27670 Length=3875 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 51256 CCGCGAAACTCTCCTGGATGCGGTTGAACATCCTGAAAAATACCCACAGTTAACGATCCG 51315 ||| |||| || | || ||| | ||| | || || ||||| |||||| | || ||||| Sbjct 1607 CCGTGAAATGCTGTTAGAAGCGATGGAAAACCCAGAGAAATATCCACAGCTGACTATCCG 1548 Query 51316 TGTTTCTGGTTATGCAGTGCGTTTTAACTCACTGACCCCTGAACAGCAACGCGACGTTAT 51375 ||| || ||||||||||||||||||||||||||||| ||||| || | |||||||| Sbjct 1547 TGTATCAGGTTATGCAGTGCGTTTTAACTCACTGACTAAAGAACAACAGCAAGACGTTAT 1488 Query 51376 CGCCCGAACCTTTACA 51391 | || || || ||| Sbjct 1487 TACTCGTACTTTCACA 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557835839290560