Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1101 123 1e-22 seq3053 107 8e-18 >seq1101 Length=117299 Score = 123 bits (136), Expect = 1e-22 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 451273 TAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTAC 451332 ||||||||| ||||| || ||| ||| | | | || || | ||||||| |||| Sbjct 48587 TAAAATGAAGGAAACTGCGGAAGCTTATCTCAATACACCTGTGAAGAATGCAGTCGTTAC 48646 Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 || || || |||||||| ||| ||||||| ||||| ||||||||||| || || ||||| Sbjct 48647 AGTGCCTGCATATTTCAACGATTCACAACGTCAAGCCACTAAAGATGCTGGTCAAATTGC 48706 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||||| || ||| | || | || || ||||| || ||||| ||||| || |||||| Sbjct 48707 TGGTTTGAACGTTTTACGTGTAATCAACGAACCAACTGCAGCAGCTCTTGCTTATGGA 48764 >seq3053 Length=25279 Score = 107 bits (118), Expect = 8e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| || || || || || || || | || || ||| | || Sbjct 9962 AATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAACCTTC 10021 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | | ||| || ||||| || || || ||||||||||| ||||| Sbjct 10022 GGACACAATCGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCA 10081 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||| ||||||| | || || ||| | ||||||||| | || ||| | |||||||| Sbjct 10082 ACAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACATTGTCCGATTATAA 10141 Query 391229 TATTGATAAGGATGCAACA 391247 ||| | ||||| ||||| Sbjct 10142 CATTCAAAAGGAGTCAACA 10160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974878839457928