Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq3187 123 3e-23 seq27670 109 6e-19 >seq3187 Length=10884 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 137906 TTGAACACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAG 137965 ||| ||||| || |||| || |||| |||||| | || || || |||||| || || Sbjct 7524 TTGCACACCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAG 7583 Query 137966 TACGAGGAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACC 138025 || | ||| | ||||||||||||||||| ||||| || | || || || || ||||| Sbjct 7584 GACTAACAGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACC 7643 Query 138026 ACGGACTCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAAT 138085 |||||| || ||||| || ||||| ||||| || || |||| ||| || |||| ||||| Sbjct 7644 ACGGACACCACCTTGAGAGCAAGATTTAACCGCAGTCTGGAAGTGCTTGTAGAACGGAAT 7703 Query 138086 A 138086 | Sbjct 7704 A 7704 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/151 (74%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 136125 GTCATAATAATGACCA---AT-TGTCTCAGCTCGTTTCATAATTGCTTCATCGAGAACAA 136180 ||||| ||||| |||| || | | || || ||||| | |||| |||||| ||| | Sbjct 5641 GTCATCATAATAACCAGAGATATCTTTC-GCACGTTTTAAAATTTCTTCATTTTCAACGA 5699 Query 136181 TCTCATCAAACACCTTTGCCGGGTCATTCAGCAGGTTACGCATGATGTGAGTATATGAAC 136240 | || ||||| | | ||||||||||||| | ||||| || || ||||| ||||||| Sbjct 5700 TATCGTCAAAAATAATCGCCGGGTCATTCACGATATTACGGATAATATGAGTGTATGAAC 5759 Query 136241 GAGAGTGAATCGTTTCAGAGAACGTCCAGGT 136271 | ||||| || ||||||||||| | ||| || Sbjct 5760 GTGAGTGGATGGTTTCAGAGAATGCCCATGT 5790 >seq27670 Length=3875 Score = 109 bits (120), Expect = 6e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 61988 ATTACATTTCCTTGGTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAG 62047 |||||||| | ||||||||||| | ||||||||| |||| |||||| ||||| | Sbjct 1459 ATTACATTGAACTTGTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTG 1518 Query 62048 AATTAAATCGGACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGG 62105 | ||||| || || |||||||| || ||||| ||||||||||| |||||||| ||||| Sbjct 1519 AGTTAAAACGCACTGCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGG 1576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529380441080000