Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9782 93.3 5e-14 seq7146 86.0 8e-12 >seq9782 Length=20874 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 176021 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 176080 ||||| || || | ||||| ||||| |||||||| | |||||| || | ||||| ||| Sbjct 11987 TCCTTGCCGCCGTTCAGACGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 12046 Query 176081 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCACC 176139 || || |||| |||| | ||||| || ||||| || | || || || || || || Sbjct 12047 TTCGAGCCCACATAGTTCTGGGCCAAATTCACAATGGTCATTTGC-AGGGACACCTCGCC 12105 Query 176140 GTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATC 176199 ||| ||||| || | | || || || | | | |||||| ||||| |||| ||| Sbjct 12106 GTGATGGTAGGCGGACATTTCGGCCACCGAACCGGACAACTGGGCCACCTTCACCTCGCG 12165 Query 176200 CTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 176259 |||| || | ||| || | | |||| ||||||||||| ||||||| || || Sbjct 12166 CTTGTCGTTGCGCTTGAAGCACGTGAACATCACCTTGCGTTGGCCCGGCTTGAAGCCGTC 12225 Query 176260 CGCCA 176264 | ||| Sbjct 12226 CACCA 12230 >seq7146 Length=6253 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| | |||||| || | || || || || ||||| || |||||||| || || Sbjct 5594 CTTCGGTGAGCGCATCATTGCGTTCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTT 5653 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 | | | || | ||||| |||||||| || |||||||| || ||| |||||||||||| Sbjct 5654 CGCCTCGATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGA 5713 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCA 102319 | | ||||| || |||||||| || || Sbjct 5714 GTTGATCTCACGCGACGAGGGCCTGCA 5740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620485055719520