Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3053 89.7 3e-13 >seq3053 Length=25279 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||||||||| || || | | ||| |||| || | || ||||| ||||| Sbjct 10153 TCCTTTTGAATGTTATAATCGGACAATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAA 10094 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| ||||| || ||| | || | ||||| ||||| |||||| ||| || || Sbjct 10093 ATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTCAC--AT 10036 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | || || || | ||| ||||| || |||||||| || || Sbjct 10035 --TCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGTCTTCCCCGTGAGGGTTTT 9978 Query 34967 CACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 9977 TACAAAGATCTGCATTTT 9960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324502379649648