Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_015457.1 Length=165919 Score E Sequences producing significant alignments: (Bits) Value seq27670 109 6e-19 seq3187 87.8 2e-12 >seq27670 Length=3875 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 59814 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 59873 || || ||||||| |||||||| |||| ||||| |||||| |||||||| || ||| Sbjct 1473 GTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCACT 1532 Query 59874 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 59933 |||||||| ||||||||||| |||||||| |||||||| || || | | | || ||| Sbjct 1533 GCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGGGTTTTCCATCGCTTCT 1592 Query 59934 TCCAGAGTTTCACGACGCAGAACGT 59958 ||| ||||||| || ||||| Sbjct 1593 AACAGCATTTCACGGTTCATAACGT 1617 >seq3187 Length=10884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/149 (77%), Gaps = 9/149 (6%) Strand=Plus/Plus Query 135927 ATATATTGGGTGCCT-TTAAG-GTGAAGCTGCTCATCACGTGCAATGAACTTCATAATCT 135984 |||| ||| |||||| ||||| || ||||| |||||||||||||| | ||| ||||| | Sbjct 5375 ATATGTTGAGTGCCTGTTAAGTGTAAAGCT--TCATCACGTGCAATCAGCTTGATAATTT 5432 Query 135985 TGGCATTACCTTCCATGATTTCCATGTTCTTATGGAAGTTAAAGGTACATGCGAAAGAT- 136043 | |||||||||||||| | | || ||||| ||| || | ||| || |||| | Sbjct 5433 TAGCATTACCTTCCATTAGCT-CACGTTCT--GCGAATGCGAATGAACAGGC-AAAGCTG 5488 Query 136044 ACATAAAAACGAATAGCTTCCAATGCGTT 136072 |||||||| || || ||||||| |||||| Sbjct 5489 ACATAAAATCGGATTGCTTCCAGTGCGTT 5517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530592738283440