Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15048 513 2e-140 >seq15048 Length=4365 Score = 513 bits (568), Expect = 2e-140 Identities = 1244/1882 (66%), Gaps = 32/1882 (2%) Strand=Plus/Plus Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || || || | ||| | ||| |||| ||| |||| | |||||||| || Sbjct 1282 TTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAGGTAATACATTCC 1341 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| |||| ||| |||| || ||||||| || ||||| || |||| | || Sbjct 1342 AGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTTCCCATAATTTGG 1401 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| || ||||||||||| || || || ||||| |||||||| ||||||||||| || Sbjct 1402 CTCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCCTCTATCAGCAGC 1461 Query 47153 CATATCTAAAATAACCCTTTG---TGGTATCTCCCATACTGTTTTATAAATTTGTTTAAT 47209 ||| |||||| || || ||| ||||| || ||||| |||| | || Sbjct 1462 CAT---TAAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAGATCCCGTAT 1518 Query 47210 GTCTTCTGGGAGA--TTAG-TATTTTGAATAGATCCTCCgttttctataattttgttttt 47266 || || ||| | | || | |||||||||| || || | | | ||| |||| |||||| Sbjct 1519 GTTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTATTTCGTTTTT 1578 Query 47267 taattcatttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGATTAACAA 47325 | || | ||| | | | |||| |||| || | || ||| ||| | ||||| | Sbjct 1579 CATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAG-TGATGGTTAACCA 1637 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAG 47385 ||||||||| || || | ||||| || | || ||||| ||||| ||||| | || Sbjct 1638 CTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACGGTTCAAAAG 1697 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 |||| |||||||| ||||| || || || |||||||| ||||| | ||| || | || Sbjct 1698 ATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCACAAGTAGAG 1757 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 || |||| |||||||| | ||| | |||||||||| | || || Sbjct 1758 AGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCCACAAATTTG 1817 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 ||| || ||| | |||||| || || ||||| || || | ||| || | || Sbjct 1818 TAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGACTTCCGTCAT 1877 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 |||||| ||| || || || || || || ||||||||||| |||||||| | | ||| Sbjct 1878 ATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATGCGCCAAAAT 1937 Query 47626 ATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGC-TTCTGATGATTCAAAAGGATAN 47684 | ||||||||||| |||| | || | | || |||| | |||| |||| || Sbjct 1938 AAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACT-TTCATAAGGGTAT 1996 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744 || | || |||| |||||||||||||||||||| |||||||| Sbjct 1997 CTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTATGTCGC 2056 Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804 ||| || | ||||| ||||||||||| | |||| ||| || |||||||||| | Sbjct 2057 AAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTTTATTTAAA 2116 Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT---T 47861 | ||| ||||||| ||||| ||||| |||| | Sbjct 2117 TTCTTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGACTTTATCCGCT 2176 Query 47862 ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921 | |||||| |||| | || || || || || || || || |||| ||||| ||| Sbjct 2177 GTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCTCATCTGGTGCC 2236 Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 | ||||| | ||||||| ||||||||||| ||||| |||||||| | ||||| || Sbjct 2237 GAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGGTTTTGTTGG 2296 Query 47982 TTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 || | | || |||| || ||||| |||||| | || || || ||||| | || Sbjct 2297 TTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTGTTTCCACTTGT 2356 Query 48042 GATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTA--TAACAGCTCTAGCTTTATTAT 48099 | || || || | ||||| | | || |||| | | || || | | | Sbjct 2357 GCCTCTATAATCGCAAACCAAAGGGACTGGGCTTTTACTTTTCTATTCGCGCGTCCCTCT 2416 Query 48100 CATGTTCGTATTTAGTATATAACTTCTCAAATTC--ATCCCCATACACATTATCTAACCC 48157 | || ||||| ||| || |||||||||| | ||||| || | || || || Sbjct 2417 --TTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACT--TCATGCAAGCC 2472 Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217 |||||| | | ||| ||||| | |||||||| || | | || |||| ||||||| Sbjct 2473 AGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTCATAAA 2532 Query 48218 TATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACT 48277 | ||| || ||||| | ||| ||||||||| | || ||| ||||||| ||||| | Sbjct 2533 CAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCTTCCTTGCCCGT 2592 Query 48278 ATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 || | ||||| | ||| ||| || | ||||||| ||||| || ||||| || |||| Sbjct 2593 GTTTTTCTTTAAATCCAA-AAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTAGATTG 2651 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | | || || | ||| |||||||| || | || | ||| |||||| ||| Sbjct 2652 CAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACATTGTTGAAAA 2711 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 |||||| |||||| || | || || || | ||||| ||||| || ||| | | || Sbjct 2712 CTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATAGATGTGCCTT 2771 Query 48457 TAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 |||||| ||| || | | || || || ||||| || || ||||||||| | || Sbjct 2772 TAGCTCGTATGCAATGAACATTT---ATTCCAATACCTCCAGCTGATTTAGATATCATAG 2828 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 | || ||| || | | | |||| ||||| || ||| | | ||| | | ||| | Sbjct 2829 CGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGTAAGTAGGA 2888 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 | ||| || | |||||| || ||| | | | ||| | ||| || |||||||| Sbjct 2889 AGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGATGCATGCG 2948 Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGAT 48693 |||| || | || || | | || || |||||||| | ||||||||||| || Sbjct 2949 TAAAAAATCTTTCCGACAGATAGTTGTAGGTTTCAATTGCGGAATCTATATCATCACCAT 3008 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753 | ||||||||||| || | ||| ||||| | |||||||||||| | |||||| || | Sbjct 3009 GAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTTGCCGTTGA 3068 Query 48754 TTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGT 48813 ||||||| | ||| || ||| | ||||||||| |||||||| ||||| ||| || Sbjct 3069 TTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGCCAAAATCAC 3128 Query 48814 TATCATTAATAATTGATGAATT 48835 ||||| || || | ||| || Sbjct 3129 GATCATATATGATAGCTGAGTT 3150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561875763744240