Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3370 219 3e-51 seq6315 152 4e-31 seq1101 122 7e-22 >seq3370 Length=4466 Score = 219 bits (242), Expect = 3e-51 Identities = 379/544 (70%), Gaps = 5/544 (1%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||||| || || || || ||| || ||||| | ||| |||| || Sbjct 4441 AGCTGTTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAACATGGAAA 4382 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 |||||||||||||||||| || || || ||| | || ||||| || |||||| | ||||| Sbjct 4381 AGTTGAAATTATTGCCAACGACCAGGGCAACCGTACCACTCCGTCGTATGTTGCCTTCAC 4322 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 |||||||||| | | ||||||||||||| ||| |||| | | | || || ||||| Sbjct 4321 CGAAACTGAACGTCTCATTGGTGATGCAGCCAAAAATCAGGTCGCCATGAACCCAACCAA 4262 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || ||||| |||||||| ||||| ||||| | | || | ||| | | || || | Sbjct 4261 CACCATTTTCGATGCTAAGCGTTTGATTGGTCGCAAATTCGAGGATGCCGCCGTGCAATC 4202 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290 || |||||||| ||||| ||| | | |||| | | ||| || || | | | || Sbjct 4201 CGACATGAAGCACTGGCCCTTCGAGGTGGTTAGCGCTGATGGCAAGCCCAAGA-TCCAGG 4143 Query 550291 TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | || ||||| | || | ||| | || || |||| || || ||||| | | Sbjct 4142 TTGTCTACAAGGACGAGAAGAAGACTTTCTTCCCTGAGGAAATCTCTTCGATGGTCCTGA 4083 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATA 550408 || ||||| | || ||| | | | |||| ||||| ||| | |||| || || Sbjct 4082 CCAAGATGAAGGAGACCGCC-GAGGCCTACTTGGGCAAGACAGTCAGCAATGCTGTGATC 4024 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || |||||||||||||| ||||| || ||||| || ||| Sbjct 4023 ACTGTCCCGGCCTACTTCAACGACTCACAACGTCAGGCTACCAAGGATGCCGGTACCATT 3964 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || | ||||| | ||||| ||||| || || ||||| ||||| | || ||||| Sbjct 3963 GCCGGTTTGAATGTGTTGCGTATCATCAACGAGCCCACTGCCGCTGCCATCGCCTATGG- 3905 Query 550529 CTTG 550532 |||| Sbjct 3904 CTTG 3901 >seq6315 Length=62450 Score = 152 bits (168), Expect = 4e-31 Identities = 312/459 (68%), Gaps = 20/459 (4%) Strand=Plus/Plus Query 368611 TGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGGT 368670 |||||||| || ||||| | |||| ||| | |||| |||||| ||||| | || Sbjct 52995 TGGGGAACGCCTATTCCGATTTGGA----TGAACA--GTGATGAAATTATTTGTGTTGGA 53048 Query 368671 TCAATTAAAGAATTGCAAGAATTATCTGGTGTGCAAAATATT-AGTGATTTACATATTGA 368729 ||||||||||| || | ||||||| ||||| | | | |||||||| | || Sbjct 53049 AGTATTAAAGAATTAGAATCACTATCTGG----CAAAACAGTGACAGATTTACACAGAGA 53104 Query 368730 TAAAATTGATCACATTAAAATTCCATCAAAGAAA---GGAAAAGGTTTATTGTCTCGAGT 368786 || ||||| | ||| |||||||||| | | ||||| || || | Sbjct 53105 AAATATTGACAATATTGAAATTCCATCGGCTATACCTGGAAATCCGCCTTTAAAACGGAT 53164 Query 368787 TGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTA 368846 | | || || || || |||||||| || ||||||||||| | || || ||||| Sbjct 53165 AGCTGCTGTATTTGACTGTTGGTTTGAGTCGGGTTCTATGCCATTTGCACAGCAACATTT 53224 Query 368847 TCCATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAAC 368906 ||| ||||| || | ||| | ||| ||| ||| || ||||| ||| || | Sbjct 53225 TCCTTTTGAGAATGAGAAAGATTTT----ATGTCAAACTTTCCT--GCTGACTTTATAGC 53278 Query 368907 AGAATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTAT 368966 |||| ||||||||||||||||||||||||||| || ||||||||| |||| ||||| | Sbjct 53279 AGAAGGAATTGATCAAACACGTGGTTGGTTTTACACGCTATTAGTAATATCTACAGCACT 53338 Query 368967 TTTCGATAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGG 369026 ||| |||| || | ||||| ||| |||| | | ||| | ||| || | || || Sbjct 53339 TTTTAATAAGGCGCCGTTTAAGAATTTAATCGCGAACGGTTTGGTTCTCGCTGCCGACGG 53398 Query 369027 TCAAAAGATGTCAAAAAGTAAGGGTAATTATTCCGATCC 369065 ||||| ||||||||| |||| || ||| | ||||| Sbjct 53399 CCAAAAAATGTCAAAACGTAAAAAGAACTATCCAGATCC 53437 >seq1101 Length=117299 Score = 122 bits (134), Expect = 7e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | || || || |||||||| || || |||||||||||||| |||||||||| Sbjct 48634 ATGCAGTCGTTACAGTGCCTGCATATTTCAACGATTCACAACGTCAAGCCACTAAAGATG 48693 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | |||||||| | || ||| | ||| | ||||| ||||| ||||| || || | Sbjct 48694 CTGGTCAAATTGCTGGTTTGAACGTTTTACGTGTAATCAACGAACCAACTGCAGCAGCTC 48753 Query 550518 TTGCATATGGACTTGATAAACATAATGATCAA 550549 |||| |||||| | || ||| | ||||| || Sbjct 48754 TTGCTTATGGAATGGACAAAACTGATGATAAA 48785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027542032341340