Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq13007 114 3e-21 seq12086 86.0 1e-12 >seq13007 Length=9541 Score = 114 bits (126), Expect = 3e-21 Identities = 151/202 (75%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 21113 TTGTGCCGTATTTGTGCCAT--TGCGACTTATAATCGCATCGATTTTGCTCGCGTGCTCG 21170 ||||||| |||||||| ||| || ||| || | | | ||||| || | || || || Sbjct 9344 TTGTGCCATATTTGTGTCATCGTGTGAC--ATTAGCTCGTCGATCTTCATTGCATGTTCA 9401 Query 21171 GTGAGATGCC-CGGCTGAAAGGTGGGCGTATCTTTGAACCATTTCGAGAGTTTCCCATCC 21229 || ||||| |||| || || || || ||| |||||||| | | ||||||||| Sbjct 9402 GTTAGATGATTCGGCGCTAAA-TGAGCATACCTTCTCACCATTTCTATTGATTCCCATCC 9460 Query 21230 TCCCATCTCTTTAAGTGCA-AGAAGAGAGACACCGGACTGAACCAGCCAGCTTGCCCAAG 21288 |||||| |||| ||||||| | || || || ||||||||||| ||||| || ||||||| Sbjct 9461 TCCCATTTCTTGAAGTGCAGATAATGGA-ACTCCGGACTGAACAAGCCAACTCGCCCAAG 9519 Query 21289 TATGCCTCAGGTCATGGAAGCG 21310 ||||||||| |||||| || || Sbjct 9520 TATGCCTCAAGTCATGAAATCG 9541 >seq12086 Length=38917 Score = 86.0 bits (94), Expect = 1e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 31721 AGCATTACGTATTCGAAGGCGAACAAGGTAAGCGAGATAGTATTGTTGTTGTAGCCCAGT 31780 |||| || |||| ||| ||| |||||||||| || || ||| |||| || || || | Sbjct 1702 AGCACTATTTATTTTCAGGTGAAGAAGGTAAGCGCGACAGCATTATTGTAGTTGCTCAAT 1643 Query 31781 TGTCGCCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTTGAA 31830 | ||||| ||||| || ||||| || |||||||||||| |||||| ||| Sbjct 1642 TATCGCCTGAATTTACAGCTCGACTAGTTGACCGCTGGAAAGAACTCGAA 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117147443740116