Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq3187 147 4e-30 >seq3187 Length=10884 Score = 147 bits (162), Expect = 4e-30 Identities = 366/550 (67%), Gaps = 18/550 (3%) Strand=Plus/Plus Query 208157 AATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGT 208216 ||| || ||||| || || ||||||| | ||| | |||||| | || || ||||| Sbjct 5326 AATTTCTGCCATTTCAGGGTCATCTTGGACTGAGCGTAACAGGTTCAACATATGTTGAGT 5385 Query 208217 ACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACCTTC 208276 || | ||| | ||||| |||||||| |||| ||||| || ||||| |||||||| Sbjct 5386 GCCTGTTAAGTGTAAAGCTTCATCACGTGCAATCAGCTTGATAATTTTAGCATTACCTTC 5445 Query 208277 CATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAATAGC 208336 ||| |||| |||||| || ||||||||||| || || ||| || || || || || || Sbjct 5446 CATTAGCTCACGTTCTGCGAATGCGAATGAACAGGCAAAGCTGACATAAAATCGGATTGC 5505 Query 208337 TTCAAGTGAGTTGATA--GATTGCAGAGC-CAGGTACAGTGCTTTCTTAATAGCACGAAG 208393 ||| |||| ||| | | ||| ||| |||||| | | ||| || | ||||| | Sbjct 5506 TTCCAGTGCGTTAACACTCATT---AAGCACAGGTATAATTGTTTTTTCAGCGCACGCAA 5562 Query 208394 ATTAAC----ATTAACCTTC--TCGCCATTGACTACGTGGTCACCCAGACCCAGGTAATA 208447 ||| ||| ||| | | ||| | | ||||| | || || ||| Sbjct 5563 TGAAACGGTGATTTGTTTTCCGTTACAGTTGTGTGTGCCTTCACCGA---ACATGTGATA 5619 Query 208448 GTACTGGTTGATCAAGGCAATCAGTTTGTCGTAGTAATGGGAAACAGATGCAGCACGTTT 208507 || |||| ||| | || || | || || ||| || | | | |||||||| Sbjct 5620 ATA---GTTGGTCATTTCGATGAGGTCATCATAATAACCAGAGATATCTTTCGCACGTTT 5676 Query 208508 CTTGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTT 208567 || | ||| || || || | || ||||| | ||| | || || || ||||| || Sbjct 5677 TAAAATTTCTTCATTTTCAACGATATCGTCAAAAATAATCGCCGGGTCATTCACGATATT 5736 Query 208568 CCTGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGC 208627 | ||| || ||||| || ||| |||||||||||||||||| |||| || || | Sbjct 5737 ACGGATAATATGAGTGTATGAACGTGAGTGGATGGTTTCAGAGAATGCCCATGTTTCCAC 5796 Query 208628 CCATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCC 208687 ||| ||||||||||| || || || | || |||||||| ||||| || | || || Sbjct 5797 CCAGGTTTCCAGCTCAGGAATCGAAATTAGTGGCAGTAATGCCACGTTAGGGCTGCGACC 5856 Query 208688 CTGGATAGAG 208697 ||| |||||| Sbjct 5857 CTGAATAGAG 5866 Score = 86.0 bits (94), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 208762 TGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGTT 208821 |||| ||||| ||||| || ||||| || |||||||||||||||||||| || || | || Sbjct 5988 TGTAATCAATGCGGTCGCGAGAGACGTCAACTTCTTCAGGACGCCAGAAAAACGACAATT 6047 Query 208822 GTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAACGAGAAACGTTGA 208881 | || || || || || || || || ||||| || || || || || | ||||| | Sbjct 6048 GCTTTTCGATCAGCTTTTCGAAAATAGGGTACTTTTGCTGATCATAGCGTGCCACGTTAA 6107 Query 208882 CGTTTTGACCCAGGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTTGGTTGAAA 208937 | ||| || | ||||| | || || | || || ||||| || || ||||| Sbjct 6108 CAGGTTGGCCGAAAAACATCGGCTCCTGCATCTGGTCATTTTTTTTCTG--TGAAA 6161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910716683039120