Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq3187 109 5e-19 >seq3187 Length=10884 Score = 109 bits (120), Expect = 5e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 117821 TTCAGCATATACTGAGTGCCGGACAAATGCAAGGCTTCATCACGGGCAATCAGTTCAATA 117880 |||| ||||| |||||||| | || || || ||||||||||| |||||||| | ||| Sbjct 5369 TTCAACATATGTTGAGTGCCTGTTAAGTGTAAAGCTTCATCACGTGCAATCAGCTTGATA 5428 Query 117881 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCGCCGAACGCAAATGAGCAGGCGAAGCTC 117940 || || | || || ||||| | | || || |||| || ||||| ||||| ||||| Sbjct 5429 ATTTTAGCATTACCTTCCATTAGCTCACGTTCTGCGAATGCGAATGAACAGGCAAAGCTG 5488 Query 117941 ACGTAGAAGCGGATCGCTTCCAGTGCGTTGATATTGTGCAGGCACAGGTA 117990 || || || ||||| |||||||||||||| | | | | ||||||||| Sbjct 5489 ACATAAAATCGGATTGCTTCCAGTGCGTTAACACTCATTAAGCACAGGTA 5538 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118350 TGTAGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTT 118409 |||| || || ||||| || | |||| ||||||||| ||||||||||| |||| || || Sbjct 5988 TGTAATCAATGCGGTCGCGAGAGACGTCAACTTCTTCAGGACGCCAGAAAAACGACAATT 6047 Query 118410 GCTTCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCG 118469 |||| ||||||||||| ||||| | | || || ||||| |||||||| | ||||| Sbjct 6048 GCTTTTCGATCAGCTTTTCGAAAATAGGGTACTTTTGCTGATCATAGCGTGCCACGTTAA 6107 Query 118470 GTGTCTCGCCGAGGAACATCGGCT 118493 | | ||||| |||||||||| Sbjct 6108 CAGGTTGGCCGAAAAACATCGGCT 6131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 12/205 (6%) Strand=Plus/Plus Query 119668 GTTAATGGCAGACAGAGTACACAGGGCTACCTCGCCCGGGTCTTCTGGATCGTTAATGTC 119727 ||||| |||||||| ||||| | || | || || ||||| ||| || || | Sbjct 7137 GTTAAATGCAGACAGTGTACATAATGCAATTTCACCT---TCTTC---ATCATTGATATT 7190 Query 119728 GTTGATCGGATGCGTCGGCAGCGCGATCTCCATACACAGGTTGGACTGCTTCACCGGGG- 119786 || | || | || ||||||||||| || | ||||||||| || || || |||| Sbjct 7191 ATTCAATGGTTTAGTTGGCAGCGCGATTTCTAAACACAGGTTAGATTGACGGACAGGGGC 7250 Query 119787 --CCTGTTTAGGGTCAAACGGGCTGTTGGTATTACAGTGGTCAACGTGCTGAACATAAAT 119844 ||||| |||||||| ||||| | ||||||||||||||||||| |||| ||||| Sbjct 7251 AACCTGT---GGGTCAAATGGGCTATGCGTATTACAGTGGTCAACGTTTTGAATGTAAAT 7307 Query 119845 ACGACCAGTTTGTGAACGCTCCTGC 119869 || || ||| | |||||| ||| Sbjct 7308 TCGGCCTGTTGACGCACGCTCTTGC 7332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477347621532880