Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq3187 237 1e-57 >seq3187 Length=10884 Score = 237 bits (262), Expect = 1e-57 Identities = 419/610 (69%), Gaps = 11/610 (2%) Strand=Plus/Minus Query 71347 GGTGAAGCAGTTCATACTGGTTTAATACCATTCTTAAAGCATTTCCAAACAGCAGTCAAA 71406 |||||||| | || || || | || || |||| ||||| ||||| || || || ||| Sbjct 7727 GGTGAAGCTTTCCACACAGGCTGTATTCCGTTCTACAAGCACTTCCAGACTGCGGTTAAA 7668 Query 71407 TCTTGCTCTCAGGGAGGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCTATGTGGCAT 71466 ||||||||||| || || | ||||||||||||||||| || ||||| || ||||| Sbjct 7667 TCTTGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTGGCAC 7608 Query 71467 TTAGAAGTTGAAAGCCTTTTAGTATTGAAAAATAACAAAGGTGTTGAAGATAACCGTGTA 71526 | |||||||||||||| ||||| ||||||| ||| || ||||||| |||||| || Sbjct 7607 CTTGAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAGTT 7548 Query 71527 CGTCATTTAGACTATGCTGTGCAATTCAATAAGCTTATGTACCAACGATTGATTACAGGT 71586 || ||| | ||||| | |||||||| ||| |||| ||||||| || Sbjct 7547 CGCCATATGGACTACGGTGTGCAAT---NNNNNNNNNNNTACGAACGTTTGATTA-AGAA 7492 Query 71587 GGCA-ATATTACATTGTTCTCACCTAATGCAGTTGAAGGTTTATATGACTCATTCTTTGC 71645 | | || || | ||| ||| | || |||| | ||||| |||||||||| Sbjct 7491 CCAAGACATCACCCTATTCAGCCCTTCAGATGTCCCAGGTCTGTATGATGCATTCTTTGC 7432 Query 71646 CGACCAAGATAAGTTTGAAAAGTTATATACTGAAGCTGAAGGTAATCCTATGATTATCCA 71705 ||||||||| | || ||| |||||| || |||| | | || ||||| Sbjct 7431 AGACCAAGATGAATTCGAACGTTTATATGTGCAATATGAA---CAAGATGAGACTATCCG 7375 Query 71706 AAAGTC---AGTAAAAGCTAGTGACTTATTTACATTGTTTGCACAAGAGCGAGCAGGTAC 71762 || || || ||||| ||| || || |||| | |||||||| || || Sbjct 7374 CAAATCCAGCGTTAAAGCAGTTGAGTTGTTCTCATTAATGATGCAAGAGCGTGCGTCAAC 7315 Query 71763 AGGTCGTATCTATCTTCAAAACGTAGATCACTGTAATACCAATAGCCCATTTATTGCAGA 71822 ||| || || || |||||||||| || ||||||||||| ||||||||||| || | Sbjct 7314 AGGCCGAATTTACATTCAAAACGTTGACCACTGTAATACGCATAGCCCATTTGACCCACA 7255 Query 71823 AGTTGCCCCTATTCGTATGAGTAACTTATGCCTTGAAATTGCATTACCAACTGAACCTAT 71882 ||||||||| | ||| |||| | || | ||||| || | |||||| |||| | Sbjct 7254 GGTTGCCCCTGTCCGTCAATCTAACCTGTGTTTAGAAATCGCGCTGCCAACTAAACCATT 7195 Query 71883 GCAGGATATTAATAAGCCTGAAGGTGAAATTGCATTATGTACATTAGCTGCATTCAATCT 71942 | | |||| ||| | |||||||||||||||||||||||| | ||||||| || | Sbjct 7194 GAATAATATCAATGATGAAGAAGGTGAAATTGCATTATGTACACTGTCTGCATTTAACTT 7135 Query 71943 TGGTGCCATT 71952 ||||| ||| Sbjct 7134 AGGTGCGATT 7125 Score = 181 bits (200), Expect = 7e-41 Identities = 245/339 (72%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 72412 TCTCAGGTATCTAATGCAACAAATGGTATTGAACCACCTCGCGGTTTAATGAGCATTAAA 72471 || ||| | ||||| ||||| ||||||||||| ||||| ||||| | || || |||||| Sbjct 6612 TCACAGATTTCTAACGCAACCAATGGTATTGAGCCACCGCGCGGCTACATCAGTATTAAA 6553 Query 72472 GCAAGTAAAGATGGTATCTTGAAGCAAGTAGTACCTCATATTGGTACAATGGCTAATGAC 72531 || ||||| || ||||| |||||||| || || | | | | | | | | Sbjct 6552 GCGTCAAAAGACGGCATCTTACGCCAAGTAGTGCCAGAT-TACGAAAACCTGAAAGGGGC 6494 Query 72532 T-ATGAATTGTTGTGGAATATTCCAAGCAATAATGGCTATATTGAATTAGTTGCAATCAT 72590 | ||||| |||| ||| | || ||| | | ||||| | || | |||| || || Sbjct 6493 TTATGAACTGTTATGGCAAATGCCATCTATCAGCGGCTACCTGCAACTCGTTGGTATTAT 6434 Query 72591 GCAAAAGTTTGTCGATCAGGCAATCTCTGCGAACACAAATTATGACCCTACTAAATTCGC 72650 ||| || ||| |||| ||| | || ||||| |||||||| |||||||| ||| |||| Sbjct 6433 GCAGAAATTTATCGACCAGTCGATTTCTGCAAACACAAACTATGACCCAACTCGTTTCGA 6374 Query 72651 AAATGGCAAAGTCCCAGTTAAGCAAATTCTTAAAGATTTAATACGAGGCTATAAGCTTGG 72710 | |||||||| ||| | || ||| | || ||||||||| | | | ||||||| |||| Sbjct 6373 GAGCGGCAAAGTACCAATGAACCAATTGCTAAAAGATTTATTGCTCGCCTATAAGTTTGG 6314 Query 72711 TGTTAAAACATTCTATTACCATAACACCCGTGATGGTGC 72749 ||| |||||| | || ||||||||||||||||||||||| Sbjct 6313 TGTGAAAACACTTTACTACCATAACACCCGTGATGGTGC 6275 Score = 150 bits (166), Expect = 1e-31 Identities = 325/473 (69%), Gaps = 26/473 (5%) Strand=Plus/Minus Query 73113 TGGTATTACTTCCACTTGTATCTTTACCTGAAGTTGAAACATGGATTGAAACATGGGCAT 73172 ||| |||||| ||||| | || | ||||| | ||||| ||| | ||||||||||||| Sbjct 5840 TGGCATTACTGCCACTAATTTCGATTCCTGAGCTGGAAACCTGGGTGGAAACATGGGCAT 5781 Query 73173 TTAGTGAAACTATTCACTCTCGCTCATATACTCATATCTTGCGTAACCTTTTCGTAGAT- 73231 | |||||| || ||||| || ||||| |||||||| | ||||| | |||| || Sbjct 5780 TCTCTGAAACCATCCACTCACGTTCATACACTCATATTATCCGTAA---TATCGTGAATG 5724 Query 73232 -CCAAGTGAAG-TATTTGATGATATT----ACAATTAACCCTGAAATATTAAAACGTGCT 73285 || | || | ||||| ||||| | ||| || ||||| ||||||||||| Sbjct 5723 ACCCGGCGATTATTTTTGACGATATCGTTGAAAATGAA----GAAATTTTAAAACGTGC- 5669 Query 73286 GAAAG-TATCGCCAAATACTTTGATGATGTGAT---ACTGAC-AACTCAGTTCATTCAAT 73340 ||||| |||| | || | |||||| | || | |||| |||| ||| || Sbjct 5668 GAAAGATATCTCTGGTTATTATGATGACCTCATCGAAATGACCAACTATTATCA--CATG 5611 Query 73341 CTCAAGGTGAAGGTACTTATCAGGTCAATGGTGAAGAGTATGTAGTCTCAAAGCGTAAGC 73400 || |||||||| || | | || || || | || ||| |||| || Sbjct 5610 TTC--GGTGAAGGCACACACAACTGTAACGGAAAACAAATCACCGTTTCATTGCGTGCGC 5553 Query 73401 TTAAAGAGCGACTTTATCT-TGCCGTTTGTGCTGTCAATGCCTTAGAAGCTATCCGCTTT 73459 | ||| | | | | || || ||| || | ||| || || | ||||| ||||| ||| Sbjct 5552 TGAAAAAACAATTATACCTGTGCTTAATGAG-TGTTAACGCACTGGAAGCAATCCGATTT 5494 Query 73460 TACGTAAGTTTCGCATGTTCATTTGCTTTTGCAGAACGTGAGCTACTTGAAGGTAATGCC 73519 || || || || || |||||||| || || ||||||||||||||| | ||||||||||| Sbjct 5493 TATGTCAGCTTTGCCTGTTCATTCGCATTCGCAGAACGTGAGCTAATGGAAGGTAATGCT 5434 Query 73520 AAGATTATTAAACTAATCGCCCGTGATGAAGCCTTGCACTTAACTGGTACTCA 73572 || ||||| || || || || ||||||||||| || |||||||| || ||||| Sbjct 5433 AAAATTATCAAGCTGATTGCACGTGATGAAGCTTTACACTTAACAGGCACTCA 5381 Score = 105 bits (116), Expect = 4e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 72067 CGTACTTTAGGTGTTGGCATTATTAATTATGCTCATCACTTAGCTAAAAATGGTGTTAAA 72126 ||||| |||||| |||| | ||||| ||||| || ||||||| ||| | |||||| Sbjct 6974 CGTACATTAGGTATTGGTGTGATTAACTATGCCTATTACTTAGCGAAACACGGTGTTCGT 6915 Query 72127 TATTCTGATGGCAGTGCCAACAATTTAACTCATGAACTCTTCGAAAGTTTTCAGTATTAC 72186 ||||| || || || || || || |||||||| || ||| ||| | ||||||||||| Sbjct 6914 TATTCAGACGGTAGCGCAAATAACTTAACTCACAAAACCTTTGAAGCTATTCAGTATTAC 6855 Query 72187 CTATTGAAAGCAAGTTGTGATTTAGCCAAAGAACAAGGCGC 72227 || || |||||| |||||||| ||||| ||||| || Sbjct 6854 CTGTTAAAAGCATCAAACGATTTAGCGAAAGAGCAAGGTGC 6814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335534718457822