Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq30410 149 2e-31 seq10222 80.6 8e-11 >seq30410 Length=1798 Score = 149 bits (164), Expect = 2e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 39655 GCTAAACAACAGTGGATTGAGTTTGAATACCATAACCTAGACAGGTTTGAGGAAATATTC 39714 ||||||||||| |||||||||||||| || || ||||||||| | ||| || || | Sbjct 1531 GCTAAACAACAATGGATTGAGTTTGAGTATCACAACCTAGACCGTTTTACCGAGATTTGG 1590 Query 39715 ATTTCGATGGATGTTGATGATGTAGGCCGCGAAGCTGCAAGGGAAATCGCAAGCCGACTG 39774 | || |||||| ||| || ||||| || || || |||| || || || | ||||| Sbjct 1591 CTGTCACTGGATGCTGACGAAGTAGGGCGAGAGGCAGCAAAAGAGATTGCTAATCGACTT 1650 Query 39775 GGTGAACATCGCTGTCGTCTGGTTACACTGCCACACAAAGATATCAACGAATGCCTGATG 39834 |||||| |||| ||||| || ||| ||||||| | |||||||||||||||||||| | Sbjct 1651 GGTGAATATCGTTGTCGCCTTGTTTCACTGCCGAAAAAAGATATCAACGAATGCCTACAG 1710 Query 39835 AACGGCGTCGCCGAGGATGAAATCTGGCAGTACATTGGCACGGCTTCATACTTCGACCCG 39894 || | || | || |||||| ||||| ||| || || | ||||| ||||| Sbjct 1711 GCTGGAATTACCCAAGAAGAAATCATTAAGTACCTTGAAACCGCAACCTACTTTGACCCT 1770 Query 39895 GAAGAACTCTACAGCGCTCGTGAGTTT 39921 || || | | ||| || || |||||| Sbjct 1771 GATGAGTTATGCAGTGCCCGCGAGTTT 1797 Score = 87.8 bits (96), Expect = 6e-13 Identities = 225/340 (66%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 38931 TGAGGTCAGCGTAATGACTCCAAGTGAACTGAGCGACCTGCTATGGGCGCAGGTTGACAG 38990 ||||| ||| ||||||| | |||||| || | || |||| | |||||| | Sbjct 750 TGAGGGAAGCTTAATGACAATTACGGAACTGTCAGATCGCCTTTGGGATGATGTTGACCG 809 Query 38991 GGTGGCTCCGCACCTGTTGCCAAACGGCAAGAAAGAGGGGCATGAGTGGGTTGCCGGCAA 39050 ||||| | | | ||||| |||||||| |||||| | |||||||| || || Sbjct 810 AGTGGCGAAGTATTTATTGCCTAACGGCAAAAAAGAGCATAACGAGTGGGTAGCTGGTTC 869 Query 39051 CGTCAACGGTGACAAGGGGAACAGCCTTAAGGTCAACCTTAGCGGCAAGAAAAAATGGGC 39110 || || ||||| || || ||| | || | |||||| || || | | ||| | Sbjct 870 GGTAAATGGTGAATCAGGTAAGAGCTTAAAAATAAACCTTTCAGGAAAAAGAGTTTGGTC 929 Query 39111 TGATTTCGCTGAGGGCGACGGCGGTGACATGCTTGATTTGTGGATGGCCTGTCGGGGAAT 39170 ||||||||| ||||| ||| || ||| | || ||||||||| | | || |||| | Sbjct 930 TGATTTCGCAGAGGGGATCGGGGGCGACTTACTGGATTTGTGGGTTGAG-GTTAGGGATT 988 Query 39171 AAATCT-GCATCAGGCTATGCAGGAGGCAAAGGCATTTCTCGGTATCAAGGATGATGATC 39229 | || ||| || |||||| ||||| ||| | ||| || || | |||||||||| Sbjct 989 GCAGCTTGCACCAAGCTATGACCGAGGCGAAGCAGTATCTAGGCATTCATGATGATGATC 1048 Query 39230 ACCATTTCGACGCCAGACGTGAGAAGAAATTTTCCAGACC 39269 | || ||| |||| ||||||||||| | |||| Sbjct 1049 ATCACTTCTCAGCCAAGATCCAGAAGAAATTTAGCCGACC 1088 >seq10222 Length=2773 Score = 80.6 bits (88), Expect = 8e-11 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15279 GGAGGGCCTGTAGATGCAGGTTCTATGTATCGGGTAGGCGAGCACGGAAAGCCTGAAATA 15338 || || ||||||||||| ||||||| || || ||||| || || |||||||| Sbjct 1938 GGTGGACCTGTAGATGCTAACAAGATGTATCAAGTCGGTGAGCATGGTAAACCTGAAATC 1879 Query 15339 TTTCAGGCCAGCAATGGTAGTCAGTACATGATACCGGGTGATAACGGGCGGGTGATTAGC 15398 || | ||||||| || | || ||||||||||||||||| || ||||| || || Sbjct 1878 TTCAAAGCCAGCACCGGAAAGCAATACATGATACCGGGTGACAATGGGCGAGTTATATCG 1819 Query 15399 AACCGAGATATGCATGGAAGTGGTAGTGG 15427 || |||||||| || || |||| ||| Sbjct 1818 AATAAGGATATGCAGGGTAGCGGTAATGG 1790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156987746603976