Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq3187 170 1e-37 >seq3187 Length=10884 Score = 170 bits (188), Expect = 1e-37 Identities = 401/602 (67%), Gaps = 19/602 (3%) Strand=Plus/Minus Query 68665 CCACACTGGCGTTTTTCCATTCCTGAAACACTTCCAGACGGCGGTGAAATCCTGCTCTCA 68724 |||||| ||| | |||| ||| || ||||||||||| ||||| ||||| |||||||| Sbjct 7716 CCACACAGGCTGTATTCCGTTCTACAAGCACTTCCAGACTGCGGTTAAATCTTGCTCTCA 7657 Query 68725 GGGCGGTGTTCGCGGCGGCGCTGCTACAGCGTTCTATCCGATCTGGCACTTGGAAGTTGA 68784 || ||||| || || || |||||||| || || || || |||||| | |||||||| Sbjct 7656 AGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTGGCACCTTGAAGTTGA 7597 Query 68785 AAGTCTGCTGGTGCTGAAAAACAACCGTGGCATTGAAGAGAACCGCGTTCGTCATCTCGA 68844 ||| ||| | || |||||||||||||| || |||||| ||||| ||||| ||| | || Sbjct 7596 AAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAGTTCGCCATATGGA 7537 Query 68845 CTATGGCGTGATGATCAACCGTCTGATGTAT-CG-CCGCCTGGTGCGCAACGAAAACATT 68902 ||| || ||| ||| | || || || | ||| || |||| Sbjct 7536 CTACGGTGTG-----CAATNNNNNNNNNNNTACGAACGTTTGATTAAGAACCAAGACATC 7482 Query 68903 ACGCTGTTCAGCCCACACGATGTGCCGGGCCTGTACGACGCGTTCTTTGTTGATCAGGAC 68962 || || |||||||| ||||| || || ||||| || || ||||||| || || || Sbjct 7481 ACCCTATTCAGCCCTTCAGATGTCCCAGGTCTGTATGATGCATTCTTTGCAGACCAAGAT 7422 Query 68963 AAGTTCGAAGAGCTGTACCTGAAGTACGAAGCCGACGAGAGCATCCGTAAGAAATCTA-- 69020 | |||||| | || || | || ||| || |||| ||||| ||||| | Sbjct 7421 GAATTCGAACGTTTATATGTGCAATATGAACAAGATGAGACTATCCG---CAAATCCAGC 7365 Query 69021 -TCCCGGCCGTCGACCTGTTCTCTACGCTGATGCAGGAGCGTGCCTCCACTGGTCGTGTT 69079 | || || || ||||||| ||||||| |||||||| || || || || || Sbjct 7364 GTTAAAGCAGTTGAGTTGTTCTCATTAATGATGCAAGAGCGTGCGTCAACAGGCCGAATT 7305 Query 69080 TATATTGCCAACGTCGACCACATGAACGATCACGGCGCATTCGTTCCGGAAATTGCACCG 69139 || ||| ||||| |||||| || || || |||| | || | |||| || Sbjct 7304 TACATTCAAAACGTTGACCACTGTAATACGCATAGCCCATTTGACCCACAGGTTGCCCCT 7245 Query 69140 GTACACCAGTCCAATCTCTGTATGGAGATCACGCTACCGACCAAGCCACTG---GCGTTC 69196 || | || || || || ||| | || ||| |||| || || || ||| || || Sbjct 7244 GTCCGTCAATCTAACCTGTGTTTAGAAATCGCGCTGCCAACTAAACCATTGAATAATATC 7185 Query 69197 ACTGACGATCCGAACGGGGAAATCGCGCTTTGCACCCTGTCTGCGTTCAACCTGGGCGCG 69256 | ||| || ||| || ||||| || | || || |||||||| || ||| | || ||| Sbjct 7184 AATGATGA--AGAA-GGTGAAATTGCATTATGTACACTGTCTGCATTTAACTTAGGTGCG 7128 Query 69257 AT 69258 || Sbjct 7127 AT 7126 Score = 134 bits (148), Expect = 9e-27 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 70307 AGGAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTACC 70366 |||| || ||||| ||||||| |||| ||||| |||||||| |||||||||||||||| Sbjct 6134 AGGAGCCGATGTTTTTCGGCCAACCTGTTAACGTGGCACGCTATGATCAGCAAAAGTACC 6075 Query 70367 GTGACTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGTCG 70426 | |||||||||||||| ||||| ||| | ||||| |||||||| ||||||||||| | Sbjct 6074 CTATTTTCGAAAAGCTGATCGAAAAGCAATTGTCGTTTTTCTGGCGTCCTGAAGAAGTTG 6015 Query 70427 ACATTACCACTGACCGCATCGACTTCAAT 70455 || | | |||||||| || | |||| Sbjct 6014 ACGTCTCTCGCGACCGCATTGATTACAAT 5986 Score = 116 bits (128), Expect = 2e-21 Identities = 233/341 (68%), Gaps = 12/341 (4%) Strand=Plus/Minus Query 69728 CAGATCACCAACTCCACCAATGGTATTGAGCCGCCCCGCGGC----CCGGTATCCGTGAA 69783 ||||| | ||| | ||||||||||||||||| || |||||| | |||| | || Sbjct 6609 CAGATTTCTAACGCAACCAATGGTATTGAGCCACCGCGCGGCTACATCAGTAT---TAAA 6553 Query 69784 GTCTTCCAAAGACGGCATCGTGAAGATGGTCGTTCCAGACTTCGCTCAACTGAAAGACCA 69843 | | || |||||||||||| | || || ||||| | || | ||||||| Sbjct 6552 G-CGTCAAAAGACGGCATCTTACGCCAAGTAGTGCCAGATTACGAAAACCTGAAAGGGGC 6494 Query 69844 GTACGAGTACCTGTGGGATATGCCGGATAACCGCGGCTATCTG--ACTAAGGTGGCCATC 69901 || || | ||| | ||||| || | ||||||| ||| ||| || | || Sbjct 6493 TTATGAACTGTTATGGCAAATGCCATCTATCAGCGGCTACCTGCAACT--CGTTGGTATT 6436 Query 69902 ATTCAGAAGTTCTTCGATCAGGCCATCTCTGCGAACACCAACTACGACCCGACTCGCTTC 69961 || ||||| || |||| ||| | || ||||| ||||| ||||| ||||| ||||| ||| Sbjct 6435 ATGCAGAAATTTATCGACCAGTCGATTTCTGCAAACACAAACTATGACCCAACTCGTTTC 6376 Query 69962 CCTGGCGACAAGGTTCCAATGATGAAGCTGCTGGAAGATCTGCTGTTTGCGTATCAGCAA 70021 ||| ||| || ||||||| | |||| ||||| | || | || ||| || Sbjct 6375 GAGAGCGGCAAAGTACCAATGAACCAATTGCTAAAAGATTTATTGCTCGCCTATAAGTTT 6316 Query 70022 GGTGTGAAGACGCTTTATTACCACAACACGCGTGATGGCGC 70062 |||||||| || ||||| ||||| ||||| |||||||| || Sbjct 6315 GGTGTGAAAACACTTTACTACCATAACACCCGTGATGGTGC 6275 Score = 96.9 bits (106), Expect = 2e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 70526 TTCAGGGTCGCAGTCCTAACGCAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGA 70585 ||||||||||||| ||||||| || | ||||| || || || |||||||||||||| | Sbjct 5861 TTCAGGGTCGCAGCCCTAACGTGGCATTACTGCCACTAATTTCGATTCCTGAGCTGGAAA 5802 Query 70586 CATGGGTCGAGACCTGGTCGTTCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTA 70645 | ||||| || || ||| | ||||| || || || ||| || || || || |||| Sbjct 5801 CCTGGGTGGAAACATGGGCATTCTCTGAAACCATCCACTCACGTTCATACACTCATATTA 5742 Query 70646 TCCGCGGTATGGTGGATGACCCTAGCATCGTTTTCGACGGCATCGT 70691 |||| ||| ||| ||||||| || |||| |||| ||||| Sbjct 5741 TCCGTAATATCGTGAATGACCCGGCGATTATTTTTGACGATATCGT 5696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330298435874760