Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq3187 147 2e-30 seq27670 104 3e-17 >seq3187 Length=10884 Score = 147 bits (162), Expect = 2e-30 Identities = 154/199 (77%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 132137 GGTGAAG--TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAA 132194 ||||||| ||| ||| | || ||| ||||| |||| || || ||||| ||||| || | Sbjct 7727 GGTGAAGCTTTCCACACA-GGCTGT-ATTCCGTTCTACAAGCACTTCCAGACTGCGGTTA 7670 Query 132195 AATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGC 132254 ||||||| |||||||||||| | ||||||||||||||||| | ||| || || |||| Sbjct 7669 AATCTTGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTGGC 7610 Query 132255 ACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTA 132314 || | ||||| || | ||| ||||| |||||||| ||| || || || | ||||| Sbjct 7609 ACCTTGAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAG 7550 Query 132315 TTCGACATATGGACTACGG 132333 |||| |||||||||||||| Sbjct 7549 TTCGCCATATGGACTACGG 7531 >seq27670 Length=3875 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 43744 ACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGC 43803 ||||| || ||||||| ||| ||| || | | | || || |||||||| |||| Sbjct 1617 ACGTTATGAACCGTGAAATGCTGTTAGAAGCGATGGAAAACCCAGAGAAATATCCACAGC 1558 Query 43804 TGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGC 43863 |||| ||||||||||| ||||||||||| || |||||||| |||||| ||||| |||| Sbjct 1557 TGACTATCCGTGTATCAGGTTATGCAGTGCGTTTTAACTCACTGACTAAAGAACAACAGC 1498 Query 43864 GCGACGTTATCGCTCGGACATTTAC 43888 |||||||| |||| || || || Sbjct 1497 AAGACGTTATTACTCGTACTTTCAC 1473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540953241296480