Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq3187 167 3e-36 seq27670 96.9 4e-15 >seq3187 Length=10884 Score = 167 bits (184), Expect = 3e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40905 TGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGT 40964 ||| |||||||| | || |||||| ||| ||||||| || ||| | ||||| ||||| Sbjct 7731 TGGCGGTGAAGCTTTCCACACAGGCTGTATTCCGTTCTACAAGCACTTCCAGACTGCGGT 7672 Query 40965 TAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTG 41024 |||||| || || || || ||||| ||||||||||| || ||| | | ||| || || || Sbjct 7671 TAAATCTTGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTG 7612 Query 41025 GCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCG 41084 ||| ||||||||||||| |||||| || |||||||| ||||| || ||||||| ||||| Sbjct 7611 GCACCTTGAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCG 7552 Query 41085 TATTCGTCACCTGGATTATGGCGTACA 41111 |||| || |||| || || || || Sbjct 7551 AGTTCGCCATATGGACTACGGTGTGCA 7525 >seq27670 Length=3875 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 51038 CCGCGAAACTCTGGAAGATGCTGTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCG 51097 ||| |||| ||| ||| || || | | ||||| ||||| |||||| | || ||||| Sbjct 1607 CCGTGAAATGCTGTTAGAAGCGATGGAAAACCCAGAGAAATATCCACAGCTGACTATCCG 1548 Query 51098 TGTGTCCGGCTATGCAGTGCGTTTCAATTCACTGACTCCTGAACAACAGCGCGACGTTAT 51157 ||| || || |||||||||||||| || ||||||||| |||||||||| |||||||| Sbjct 1547 TGTATCAGGTTATGCAGTGCGTTTTAACTCACTGACTAAAGAACAACAGCAAGACGTTAT 1488 Query 51158 CGCCCGAACCTTTACA 51173 | || || || ||| Sbjct 1487 TACTCGTACTTTCACA 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569853255104080