Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq27670 113 5e-20 seq3187 84.2 2e-11 >seq27670 Length=3875 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 61411 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61470 ||||| ||||||| |||||||| |||| ||||| |||||| |||||||| || ||| Sbjct 1473 GTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCACT 1532 Query 61471 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61530 |||||||| ||||||||||| |||||||| |||||||| || || | | | || ||| Sbjct 1533 GCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGGGTTTTCCATCGCTTCT 1592 Query 61531 TCCAGAGTTTCACGACGCAGAACGT 61555 ||| ||||||| || ||||| Sbjct 1593 AACAGCATTTCACGGTTCATAACGT 1617 >seq3187 Length=10884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/148 (75%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 136444 ATATATTGGGTGCCT-TTAAG-GTGAAGCTGTTCATCGCGTGCAATGAACTTCATAATCT 136501 |||| ||| |||||| ||||| || ||||| ||||| |||||||| | ||| ||||| | Sbjct 5375 ATATGTTGAGTGCCTGTTAAGTGTAAAGCT--TCATCACGTGCAATCAGCTTGATAATTT 5432 Query 136502 TGGCATTACCTTCCATGATTTCCATGTTCTTATGGAAGTTAAAGGTACATGCAAAAGATA 136561 | |||||||||||||| | | || ||||| ||| || | ||| ||||| | Sbjct 5433 TAGCATTACCTTCCATTAGCT-CACGTTCT--GCGAATGCGAATGAACAGGCAAAGCTGA 5489 Query 136562 CATAAAAACGAATAGCTTCCAATGCGTT 136589 ||||||| || || ||||||| |||||| Sbjct 5490 CATAAAATCGGATTGCTTCCAGTGCGTT 5517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535317178836160