Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq2999 113 8e-20 >seq2999 Length=19333 Score = 113 bits (124), Expect = 8e-20 Identities = 350/537 (65%), Gaps = 11/537 (2%) Strand=Plus/Plus Query 168269 CTAACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTG 168328 |||||| || || |||| ||| || ||||| ||||| || || | | | || Sbjct 14696 CTAACCTTTCACACACACCACTTGGCGTAGGGTATGCACGATTTCAACTAATGATGATTG 14755 Query 168329 GGCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTC 168388 || ||||| ||| ||||| ||||| ||| |||| | || || ||||| | Sbjct 14756 CGCTGCCATTACGGCATCGATGTCTTTGTATGCCATCGGAATTTCATCAATCACATCGCT 14815 Query 168389 GTCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTC---CAGGGAGACGAG 168445 || || ||||| || ||| | || | | | | | || ||| || |||| | Sbjct 14816 ATCTTTTCGGCATTCAACG---TGCGCAGTTGCCATTTTCTGGTCGCTCACAGAGAAACG 14872 Query 168446 CTTCTTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGC 168505 ||| || || ||| || ||| || ||||| || ||||||||||| ||||| || Sbjct 14873 CTTTTTGGCTTCCGTTCGGCTCATCACACGGCCTGCACCGTGGCTGCAAGAGCAAAAACT 14932 Query 168506 GTCAGCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGAT 168565 || | | || |||||||| || || || || |||||||| || |||||||| Sbjct 14933 TTCTTCATCACCGAGTCCGCGCACAATAAAGCTTTTTGCCCCCATCGACCCTGGAATGAT 14992 Query 168566 GCCGAGTTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCC 168625 || | || | | || | || ||||| ||||| || || || || || | || || || Sbjct 14993 CCCCATTTGGCCTTTTCGAGCAGACACAGCGCCTTTTCGTGTTACCAAAACTTCTTCACC 15052 Query 168626 GAAGTGGCGTTCCTTGTTGACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCG-GTCT 168684 || || | || || | || ||||| ||||| || || ||||||| ||||| | || Sbjct 15053 AAAATGTTGCTCTTTTTGCACATAGTTATGGTGGCAATTTACCGCTT-CTTGTTGTGTGG 15111 Query 168685 TGAACGCCGGCACGAACTCCCG---GATCGCCTTGAGCACGCGGACCATCATCATGTCGC 168741 | |||| | || || | ||| | ||||| ||| |||||||| |||| Sbjct 15112 TAAACGGTTTTGGAATTTCACGTGAAAGCGCTTCCAGCACTCGGTGCATCATCACTTCGC 15171 Query 168742 GGTTCAGGCGCGCGAAGTCTTGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAAT 168798 |||| |||| || || || || ||||| ||||| ||||| || ||||| | |||| Sbjct 15172 GGTTATGGCGGGCAAAATCCTGTGCCCAACCCACAGCTTCCATATAGTCATTAAAAT 15228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895395037644720