Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq2999 116 5e-21 >seq2999 Length=19333 Score = 116 bits (128), Expect = 5e-21 Identities = 348/531 (66%), Gaps = 12/531 (2%) Strand=Plus/Plus Query 135404 CTAGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGA--GGTCCTTC 135461 ||| || ||||| || | ||||| ||||| || ||||| || || | | | || Sbjct 14696 CTAACCTTTCACACACACCACTTGGCGTAGGGTATGCACGATTTCAACTAATGATGATT- 14754 Query 135462 TGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCA 135521 | || |||| || || |||||||| ||||| |||||||| ||||| || ||||| | Sbjct 14755 -GCGCTGCCATTACGGCATCGATGTCTTTGTATGCCATCGGAATTTCATCAATCACATCG 14813 Query 135522 GCGTCCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTC 135581 || || ||||| || ||| | | || ||| | ||||||| || | ||| | Sbjct 14814 CTATCTTTTCGGCATTCAACGTGCGCAGTTGCCATTTTCTGGTCGCTCACAGAGAAACGC 14873 Query 135582 GCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAG 135641 ||||| | || || |||| ||||| || ||||| ||| ||||| || Sbjct 14874 TTTTTGGCTTCCGTTCGGCTCATCACACGGCCTGCACCGTGGCTGCAAGAGCAAAAACTT 14933 Query 135642 TCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATC 135701 || ||| || |||||||| || || || ||||||||||| || || |||||| Sbjct 14934 TCTTCATCACCGAGTCCGCGCACAATAAAGCTTTTTGCCCCCATCGACCCTGGAATGATC 14993 Query 135702 CCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCG 135761 || | ||| | || | || ||||| ||||| || || || || || || || | Sbjct 14994 CCCATTTGGCCTTTTCGAGCAGACACAGCGCCTTTTCGTGTTACCAAAACTTCTTCACCA 15053 Query 135762 AAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTG 135821 || || || || || || ||||| |||||||| || |||||||| | | || | Sbjct 15054 AAATGTTGCTCTTTTTGCACATAGTTATGGTGGCAATTTACCGCTTCTTGTTGTGTGGTA 15113 Query 135822 AACGG---CGGCAGGCCCGACGCCCGCATG-GCCTCCAGGACCCGGACCATCATCATCTC 135877 ||||| || | | ||| | | | || ||||| || ||| |||||||| || Sbjct 15114 AACGGTTTTGGAATTTC--ACG--TGAAAGCGCTTCCAGCACTCGGTGCATCATCACTTC 15169 Query 135878 GCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTC 135928 |||||| || || || ||||| |||| | || ||||||| ||||| Sbjct 15170 GCGGTTATGGCGGGCAAAATCCTGTGCCCAACCCACAGCTTCCATATAGTC 15220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700154413097040