Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq12086 197 5e-46 >seq12086 Length=38917 Score = 197 bits (218), Expect = 5e-46 Identities = 403/597 (68%), Gaps = 9/597 (2%) Strand=Plus/Plus Query 19852 ATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACACATGAAG 19911 || ||||| ||||||||||||||||| ||| | || |||||||| || || || | Sbjct 7423 ATTCGTCGGGAGTTTCCTGACAACATTGATTTACTCATCATCGACGAGGCCCATTTA--- 7479 Query 19912 CGTCGTGCGT---TACTTGAGGTTATCCGGGACAAAGATATCAGGGTTCTTGGGCTTTCC 19968 || ||| | |||| || || || || || | ||| | | || | ||| | || Sbjct 7480 CGCCGTAAGAAAATACTCGAAGTCATTCGTGATACAGACCTAAAAGTAATCGGGTTATCT 7539 Query 19969 GGCACCCCGTTCGCAGCCTGGATGGGGAAGTACTACGAATGCCTGATCAAGCCTACAACG 20028 || || || || | | | | || |||| |||||| | |||||||| || || ||| Sbjct 7540 GGAACACCTTTTTCCCCGTTTCTTGGTGAGTATTACGAAAGGCTGATCAAACCAACCACG 7599 Query 20029 ATTCGTGAACTTATTCAGCGTGGTGATCTGAGCGATTATGAGTTTTTTGCCCCCTCAATG 20088 || || |||||||||||||| ||||| || | || || |||| || || ||| | Sbjct 7600 ATGAAGGAGCTTATTCAGCGTGGGGATCTAAGTAAATACGAATTTTACGCACCGACAAAG 7659 Query 20089 CCTGATCTGGCTGGCGTAAAAAC---CAGTAACACCGTATTTGGACGGGATTACAACGAG 20145 || ||| | | || ||| | | ||| | | ||| || | ||||| || ||| Sbjct 7660 CCGGATTTATCAAAAGTGAAATCAGTCCGTAGCGAGGAATTCGGTAGTGATTATAAAGAG 7719 Query 20146 GAACAGCTCGCATCCATCATGGGGAGTTCGGATCTGGTTGGCGATATCGTCAGCAACTGG 20205 | || |||| || ||| || ||||||||||||||||| | ||| |||||| Sbjct 7720 GCTGAGATCGCTGAAATTATGTCAGGTGCGGATCTGGTTGGCGATGTGGTCGATAACTGG 7779 Query 20206 CTTGAGAATGGCGAGGATTTACCGACGATCTGCTTCTGCGTGAATGTGGCTCATGCGAAC 20265 || | ||||| || | |||| || ||||| || ||||| | ||| ||||| || Sbjct 7780 CTGGCTAATGGTGAAAACCTACCAACCATCTGTTTTTGCGTCACTGTCAGCCATGCAAAT 7839 Query 20266 TTTGTTACCCGTGAGTTTTTACAGTCTGGCATTGGCGCAGAGGTGATGACGGCAGATACC 20325 | ||| ||| || ||| | || || | || || || || || || ||||| Sbjct 7840 TATGTCACCGTTGCTTTTAATCGCTCAGGGGTAAATGCGGAAGTCATTACAGCTGATACA 7899 Query 20326 CCCCATGATGAACGACAGGACATCATTCGCCGTTTTGAAGAGGGTGCGACCAAAATAATT 20385 || |||||||| || | | |||||||| |||||| ||| ||||||| ||||| || ||| Sbjct 7900 CCACATGATGAGCGTCGAGTCATCATTCACCGTTTCGAACAGGGTGCAACCAAGATCATT 7959 Query 20386 GTCAACGTTGGCGTACTGGTTGCGGGATTTGACAGCGATGTTCGCTGCCTGATCTAC 20442 || || ||||| || || ||||| ||||| || |||||||| ||| | || ||| Sbjct 7960 GTTAATGTTGGAACGCTTGTAGCGGGTTTTGATAGTGATGTTCGTTGCATCATTTAC 8016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193475770270620