Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq13268 84.2 5e-12 >seq13268 Length=3871 Score = 84.2 bits (92), Expect = 5e-12 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 1434 TAAGGGGTTTTTAGTAACAGCATCTTCAAGATGTTCTGGTGCGAAATGGGCATAGACCAT 1493 ||| || ||| |||| |||| || | || || || || || || ||||| |||| Sbjct 3057 TAATGGATTTAAGGTAATAGCAAATTGCAAATAATCAGGGGCTAAGTGAGCATAAGCCAT 3116 Query 1494 TGTCATTTTTATATCTGAGTGCCCTAAAATATCTCTCAATACAAGAATATTTCCGCCATT 1553 |||| || |||| | ||| ||||| || | | || ||| |||||| || ||||| Sbjct 3117 TGTCTGTTGAATATTGGCGTGACCTAATATTTGTTGCAGAGCAACAATATTGCCACCATT 3176 Query 1554 CATCATAAAGTGACTAGCGAATGTATGGCGCAATACATGCGTGCACTGGCCCTCTGGCAA 1613 |||||| |||||||| ||||| ||||| | | || ||||| || || |||||||| Sbjct 3177 CATCATGAAGTGACTTGCGAAAGTATGCCTAAGAACGTGCGTAGCTTGACCGTCTGGCAA 3236 Query 1614 GTCA 1617 ||| Sbjct 3237 ATCA 3240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109009849963668