Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7146 210 4e-49 seq657 104 4e-17 >seq7146 Length=6253 Score = 210 bits (232), Expect = 4e-49 Identities = 421/619 (68%), Gaps = 9/619 (1%) Strand=Plus/Minus Query 47952 CCAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTA 48011 ||||||| | || || ||| | |||||||| | ||||| || || ||||||||| | Sbjct 5931 CCAGCAGACGGTCGGCCACGAATTCGATGTACTCGGACATCAGTTTGCAGTTCATGCCGA 5872 Query 48012 TGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCA 48071 | | || |||| || | ||||| ||||||| || |||| ||| ||||| | | Sbjct 5871 TCAAATTGACCGGCAGCGCTTCGGTGAGGAACTCCTGTTCGATCTTCACCGCTTCGTCGA 5812 Query 48072 CAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATG 48130 |||| | | ||| | | | || | ||| | || |||| | | | || | Sbjct 5811 TGATCTCGATGATGCGTT-CGCGGCTGGGACGCTGCACCAGATGCTGGA---ACATCAGG 5756 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||| || || | |||| ||| ||||| || ||| | | ||||||||||| ||| Sbjct 5755 CAGGCGAAATCACAATGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGGAGAAGGTGAGG 5696 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | || || |||||||| || | |||||| ||| |||||||| Sbjct 5695 CCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCCGAGAAGAAA 5636 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || |||||||| ||| | ||| ||||| || ||| ||| Sbjct 5635 ATGCCCTCGACGGCGGCGAACGCAATGATGCGCTCACCGAAGTTGGCCGACTTCGAGGAG 5576 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| | | ||||||||| ||||||||||||| |||| || || | || | Sbjct 5575 ATCCATGCCATCGCCCAGTCGGCCTTCTTCTTGACCGCCGGCAATGTTTCGACCGCATTG 5516 Query 48371 AAGAGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 || || | | || | |||| ||| | ||||| | ||| | ||||| Sbjct 5515 AACAGGAAGTCCCGCTGA--TGCGGATCCCTGATGTAGGTGTCAATCAGAATGCTGTACA 5458 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| |||||||| || ||||||||||| ||||||||| | ||||| || Sbjct 5457 TCTCCGAGTGGACATTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCTGTCA 5398 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 | ||||| ||| | ||| | ||||| ||||||||| ||||| || ||||| || || | Sbjct 5397 CTTGCACCTCTTGGCTGAAACGCTCCACCAGATTCTCGTTGACAATGCCATCGGAGGCGG 5338 Query 48549 CAAAGAAGGCAAGGACATG 48567 | |||||||| || || || Sbjct 5337 CGAAGAAGGCCAGCACGTG 5319 >seq657 Length=6643 Score = 104 bits (114), Expect = 4e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||||||||| ||||| |||||||||||||||| ||||| ||||| |||||| |||||| Sbjct 1990 CTTGAGCACTTTCACCTTCTCCTCCAGCCGCGATATGCGCTCCAGCTTGCGCTTGCGGCA 1931 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| ||||| || || || | | ||| |||||| ||||| |||||| | Sbjct 1930 CTTGGAGGCGGCCAACCGATTGCGCTGACGCTTGCGTTCCAATTTGATTTTCTCCTGGGC 1871 Query 241609 CTCCATGTCGAT 241620 |||| ||||| Sbjct 1870 GGCCATATCGAT 1859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931146609789440