Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7146 132 9e-26 >seq7146 Length=6253 Score = 132 bits (146), Expect = 9e-26 Identities = 306/449 (68%), Gaps = 18/449 (4%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| |||| ||||| || ||||| ||||| || || |||||||||||| ||| | | Sbjct 5320 ACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAATCTGGTGGAGCGTT 5379 Query 25655 TCACCAGGGAAGTGC-AGT-ACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | || |||| ||| || ||||| || |||||||| |||||||| ||||| Sbjct 5380 TCAGCCAAGAGGTGCAAGTGAC--AGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCAT 5437 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGA--C 25767 || ||||| ||||| ||| |||| || ||||||| || ||||| | || | Sbjct 5438 GGAGAATGTCCACTCGGAGATGTA---CAGCATTCTGATTGACACCTACATCAGGGATCC 5494 Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGC-ATCAAGAGGAA 25826 | | | | || || ||||| ||| |||| |||| || || |||||| ||| Sbjct 5495 GCATCAGCGGGACTTC--CTGTTCAATGCGGTCGA-AACATTGCCGGCGGTCAAGAAGAA 5551 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| ||| |||||| | || || | || || ||||| | | Sbjct 5552 GGCCGACTGGGCGATGGCATGGATCTCCTCGAAGTCGGCCAACTTCGGTGAGCGCATCAT 5611 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT-GCGGCCATCTTCTGGC 25945 || || || || || |||||||| || ||| ||| |||| || | |||||||||| Sbjct 5612 TGCGTTCGCCGCCGTCGAGGGCATTTTCTTC-TCGGGCAGTTTCGCCTCGATCTTCTGGC 5670 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 | ||| || || ||||||||| || ||| ||||||||| | ||| | |||| Sbjct 5671 TGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGTTGATCTCACGCGACG 5730 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 |||| || || | ||||| ||||||||| Sbjct 5731 AGGGCCTGCATTGTGATTTCGCCTGCCTG 5759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928459724167040