Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq27670 109 6e-19 seq3187 84.2 2e-11 seq16859 82.4 8e-11 >seq27670 Length=3875 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 60084 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60143 || || ||||||| |||||||| |||| ||||| |||||| |||||||| || ||| Sbjct 1473 GTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCACT 1532 Query 60144 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60203 |||||||| ||||||||||| |||||||| |||||||| || || | | | || ||| Sbjct 1533 GCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGGGTTTTCCATCGCTTCT 1592 Query 60204 TCCAGAGTTTCACGACGCAGAACGT 60228 ||| ||||||| || ||||| Sbjct 1593 AACAGCATTTCACGGTTCATAACGT 1617 >seq3187 Length=10884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/149 (76%), Gaps = 9/149 (6%) Strand=Plus/Plus Query 136416 ATATATTGGGTGCCT-TTAAGA-TGAAGCTGCTCATCACGTGCAATGAACTTCATAATCT 136473 |||| ||| |||||| ||||| | ||||| |||||||||||||| | ||| ||||| | Sbjct 5375 ATATGTTGAGTGCCTGTTAAGTGTAAAGCT--TCATCACGTGCAATCAGCTTGATAATTT 5432 Query 136474 TGGCATTACCTTCCATGATTTCCATGTTCTTATGGAAGTTAAAGGTACATGCGAAAGAT- 136532 | |||||||||||||| | | || ||||| ||| || | ||| || |||| | Sbjct 5433 TAGCATTACCTTCCATTAGCT-CACGTTCT--GCGAATGCGAATGAACAGGC-AAAGCTG 5488 Query 136533 ACATAAAAACGAATAGCTTCCAATGCGTT 136561 |||||||| || || ||||||| |||||| Sbjct 5489 ACATAAAATCGGATTGCTTCCAGTGCGTT 5517 >seq16859 Length=8331 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 56611 CCACAATGACAAACTGCTTTTAGTTCAATAAGTTTATCTGCAATCGCCAAAAGTTCTTTA 56670 ||||| | |||||| | ||| || |||| ||| ||||| || ||| | | | || | Sbjct 6075 CCACAGTAACAAACGGTTTTAAGCTCAACAAGCTTATCAGCCCACGCAAGTAAATATTGA 6016 Query 56671 GAACCTTCAAATAATTTTCCAGCGAAATCAGTCCTTAGTCCATAAGCCATAACAGGAACA 56730 ||||||||||| | || || || || || |||| |||||| | |||||| | | Sbjct 6015 CTCCCTTCAAATAACTGCCCTGCAAAGTCTGTTCTTAAGCCATAACATAAAACAGGGATA 5956 Query 56731 TTATATGTATCAACAATTCGGCTTAATTGATGAACCTGTTCAGTTT--TTAAAAACTGAG 56788 | | |||||||||| || |||||| | || |||| |||| ||||||| ||| Sbjct 5955 TCACTGTTATCAACAATATCGCATAATTGCTCTACTTGTT--GTTTAGTTAAAAATTGAC 5898 Query 56789 CTTCATCTACAAATACACAATGAATATCTTTTTGTGC 56825 ||||| | || |||||||| | |||||||||| Sbjct 5897 ACTCATCAATAAGAACACAATGTA---CTTTTTGTGC 5864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532447968832240