Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq3187 98.7 2e-15 seq27670 96.9 8e-15 >seq3187 Length=10884 Score = 98.7 bits (108), Expect = 2e-15 Identities = 258/391 (66%), Gaps = 25/391 (6%) Strand=Plus/Minus Query 128738 TGTTCCCAGGGAGGTGTAAGAGGCGGGGCAGCAACCGTACATTTTCCAATGTGGCATTTG 128797 || || || || ||||| | || || || || ||| || || ||||| ||||| | Sbjct 7664 TGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTGGCACCTT 7605 Query 128798 GAATTTGAAAATATTGTAGTACTGAAAAATAATAAAGGAACTGAATTTAACCGAGTAAGA 128857 ||| |||||| | |||| |||||||| || || |||| ||||||||| | Sbjct 7604 GAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAGTTCGC 7545 Query 128858 CAACTGGACTATTGCTTCCAAATCAATAAGACATTATATCAACGATTGATTGATGGAA-- 128915 || ||||||| | | ||| | | |||| |||||| | ||| Sbjct 7544 CATATGGACTACGGTGTGCAATNNNNNNNNNNNT---ACGAACGTTTGATTAA--GAACC 7490 Query 128916 AAGACATTACATTCTTTAGCCCACATGATGTTCCTGATCTATATGATGCATTTTGTGCTG 128975 ||||||| || | || ||||| ||||| || | ||| ||||||||||| | ||| | Sbjct 7489 AAGACATCACCCTATTCAGCCCTTCAGATGTCCCAGGTCTGTATGATGCATTCTTTGCAG 7430 Query 128976 ATCAAGAAGAATTTGAACGTCTGTATATTAAGTATGAACTCGATGAAACTATTCGTAGGA 129035 | ||||| ||||| |||||| | ||| | | ||||||| ||||| ||||| || | Sbjct 7429 ACCAAGATGAATTCGAACGTTTATATGTGCAATATGAACAAGATGAGACTATCCGCAA-- 7372 Query 129036 AAACTATGCCAGCGATTGAAGCATTT-AGT------CATCTA--ATACAAGAGCGTGCAG 129086 || |||||| || ||||| || ||| ||| | || ||||||||||| Sbjct 7371 -----AT-CCAGCG-TTAAAGCAGTTGAGTTGTTCTCATTAATGATGCAAGAGCGTGCGT 7319 Query 129087 AAACTGGCCGCATTTATATTCAGAATATTGA 129117 ||| ||||| ||||| ||||| || |||| Sbjct 7318 CAACAGGCCGAATTTACATTCAAAACGTTGA 7288 >seq27670 Length=3875 Score = 96.9 bits (106), Expect = 8e-15 Identities = 96/123 (78%), Gaps = 5/123 (4%) Strand=Plus/Minus Query 321655 CCTGAAAAATATCCTCAACTTACTATTCGTGTTTCTGGATATGCAGTTCGTTTTAATTCT 321714 || || |||||||| || || ||||| ||||| || || |||||||| |||||||| || Sbjct 1576 CCAGAGAAATATCCACAGCTGACTATCCGTGTATCAGGTTATGCAGTGCGTTTTAACTCA 1517 Query 321715 CTTACGAAAGAACAACAAAATGATGTAATTTCACGAACTTTCACTACTAAGTTCTAATGT 321774 || || ||||||||||| | || || ||| | || |||||||| |||||| ||||| Sbjct 1516 CTGACTAAAGAACAACAGCAAGACGTTATTACTCGTACTTTCAC----AAGTTC-AATGT 1462 Query 321775 AAT 321777 ||| Sbjct 1461 AAT 1459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105987422598992