Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq30410 161 3e-35 seq13007 114 4e-21 seq6146 109 2e-19 >seq30410 Length=1798 Score = 161 bits (178), Expect = 3e-35 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 35317 GCTAAGCAACAGTGGATTGAGTTTGAGTATCACAACCTCGACAGGTTTGAGGAAATATTC 35376 ||||| ||||| |||||||||||||||||||||||||| ||| | ||| || || | Sbjct 1531 GCTAAACAACAATGGATTGAGTTTGAGTATCACAACCTAGACCGTTTTACCGAGATTTGG 1590 Query 35377 ATCTCGATGGACGTTGATGATGTTGGTCGTGAAGCCGCAAGGGAAATCGCAAGCCGACTC 35436 | || |||| | ||| || || || || || || |||| || || || | ||||| Sbjct 1591 CTGTCACTGGATGCTGACGAAGTAGGGCGAGAGGCAGCAAAAGAGATTGCTAATCGACTT 1650 Query 35437 GGTGAACATCGTTGCCGTCTTGTTACTCTGCCGTACAAAGACATCAACGAATGCCTGATG 35496 |||||| ||||||| || |||||| | |||||| | ||||| |||||||||||||| | Sbjct 1651 GGTGAATATCGTTGTCGCCTTGTTTCACTGCCGAAAAAAGATATCAACGAATGCCTACAG 1710 Query 35497 AACGGTGTTACCGAGGATGAAATCTGGCAGTACATCGGCACGGCATCCTACTTTGATCCT 35556 || ||||| | || |||||| ||||| | | || ||| |||||||||| ||| Sbjct 1711 GCTGGAATTACCCAAGAAGAAATCATTAAGTACCTTGAAACCGCAACCTACTTTGACCCT 1770 Query 35557 GAAGAACTCTACAGCGCGCGAGAGTTT 35583 || || | | ||| || || |||||| Sbjct 1771 GATGAGTTATGCAGTGCCCGCGAGTTT 1797 >seq13007 Length=9541 Score = 114 bits (126), Expect = 4e-21 Identities = 151/202 (75%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 22125 TTGTGCCGTATTTGTGCCAT--TGCGACTTATAATCGCATCGATTTTGCTCGCGTGCTCG 22182 ||||||| |||||||| ||| || ||| || | | | ||||| || | || || || Sbjct 9344 TTGTGCCATATTTGTGTCATCGTGTGAC--ATTAGCTCGTCGATCTTCATTGCATGTTCA 9401 Query 22183 GTGAGATGCC-CGGCTGAAAGGTGGGCGTATCTTTGAACCATTTCGAGAGTTTCCCATCC 22241 || ||||| |||| || || || || ||| |||||||| | | ||||||||| Sbjct 9402 GTTAGATGATTCGGCGCTAAA-TGAGCATACCTTCTCACCATTTCTATTGATTCCCATCC 9460 Query 22242 TCCCATCTCTTTAAGTGCA-AGAAGAGAGACACCGGACTGAACCAGCCAGCTTGCCCAAG 22300 |||||| |||| ||||||| | || || || ||||||||||| ||||| || ||||||| Sbjct 9461 TCCCATTTCTTGAAGTGCAGATAATGGA-ACTCCGGACTGAACAAGCCAACTCGCCCAAG 9519 Query 22301 TATGCCTCAGGTCATGGAAGCG 22322 ||||||||| |||||| || || Sbjct 9520 TATGCCTCAAGTCATGAAATCG 9541 >seq6146 Length=11763 Score = 109 bits (120), Expect = 2e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29813 TCACGCACTGTCTTGCGGTTGGCATCAATTAGCTTTGGAATTTCCTTAAGTTCAGCAACA 29872 || ||||| || ||| ||||| || ||||||||||| ||||| || | || || || Sbjct 2346 TCTCGCACAGTTCGGCGATTGGCGTCGATTAGCTTTGGTATTTCTTTTAACTCTGCTACC 2287 Query 29873 AGGTCTTTGCCAAGACCATCGAGATATGTTTTCGTCTGCGCAACTTTATACGCCAGAGAA 29932 | |||||| || || ||||| || || ||||| | || || ||||| || |||| ||| Sbjct 2286 AAGTCTTTACCGAGCCCATCAAGGTAAGTTTTTGATTGAGCGACTTTGTAGGCCAATGAA 2227 Query 29933 GCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAGGCACAAAGGACATAACTTCACGT 29992 || || ||||| | || || | || |||| |||||| | ||| || ||||||| | Sbjct 2226 GCAATTTCCTTGCGACCTTTAACAGTGGTGACATCAGGAATAAAAGAATTAACTTCTTGC 2167 Query 29993 TCAACCTTTTGAAGGATTTCTTC 30015 || || || ||| ||| ||||| Sbjct 2166 TCTACTTTACGAATGATATCTTC 2144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136720531915464