Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq23044 224 2e-54 seq27971 156 1e-33 >seq23044 Length=7840 Score = 224 bits (248), Expect = 2e-54 Identities = 252/337 (75%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 5188 AACAACAGAACGGCATCGACGATCTGCGCCTCGCAATGCTGCAGGCTCAGCTGGCACGCT 5247 || |||| | || || || || ||||| ||||| ||||| ||||||||| |||||| | Sbjct 6037 AAAAACAAACGGGTATTGATGACCTGCGTCTCGCCATGCTTCAGGCTCAGTTGGCACTTT 6096 Query 5248 TCCCGGCTTCCGGCCACGTCCTGCACTTCATCGACTGGGCGAAGATTGAACTCACCAAAG 5307 |||| || || || || || ||||||| || || |||||||||||||| || | |||| Sbjct 6097 TCCCTGCGTCAGGACATGTTTTGCACTTTATTGATTGGGCGAAGATTGAGCTAGCAAAAG 6156 Query 5308 ACACGCTGGGCCGCTATATCCTGGCGAACCCAGCGGCCCTGACTGGCCCTACCCTTTGGG 5367 || |||| || || ||| | || |||||| ||| || || ||||| ||||||| Sbjct 6157 ACGAATTGGGTCGTTACATCTTAGCTAACCCATCGGGTTTGTTAGGTCCTACACTTTGGG 6216 Query 5368 GCCTGCCGGTGGTAGCAACCGAAGCCGCAGCATTCCAGGGCAAGTTCCTGACCGGTGCAT 5427 | | || || |||| ||| | ||||| || ||| | || ||||| | ||||| |||| Sbjct 6217 GTTTACCAGTTGTAGAAACTCAGGCCGCTGCTTTCAAAGGTAAGTTTTTAACCGGGGCAT 6276 Query 5428 TCAACGCTGCGGCACAGCTGTTTGACCGTGAAGACGCCAACGTGGTGATCTCCACTGAGA 5487 |||| || | ||| ||| | ||||||||||| || | |||||||| || || ||||||| Sbjct 6277 TCAATGCAGGGGCTCAGTTATTTGACCGTGAGGAAACTAACGTGGTCATTTCTACTGAGA 6336 Query 5488 ACGCCGACGACTTTGAGAAAAACATGATCTCGATTCG 5524 | | || ||||| |||||||||||||| || ||||| Sbjct 6337 ATACTGATGACTTCGAGAAAAACATGATTTCCATTCG 6373 Score = 215 bits (238), Expect = 1e-51 Identities = 307/431 (71%), Gaps = 5/431 (1%) Strand=Plus/Plus Query 2963 GAGGGCGGGCTGAAATATCAGAACGTCACTATGAACCCGGAAGCAGCGCAGATGCTTGAG 3022 ||||| || ||||||| | || ||||||||||| || |||||||| || ||| | || Sbjct 3669 GAGGGGGGCATGAAATACAACAATGTCACTATGAATCCTGAAGCAGCTCAAATGTTAGAA 3728 Query 3023 TCGCGGTCGTTCAGCATCGAGGAAATCTGCAGATGGTTCCGCGTACCGCCATTTATGGTC 3082 || | || || || |||||||| ||| | ||||| || || || || |||||||| Sbjct 3729 AGTAGGGCTTTTAGTATAGAGGAAATTTGCCGCTGGTTTCGTGTTCCTCCGTTTATGGTT 3788 Query 3083 GGCCACACATCGAAACAGAGCAGCTGGGCATCGAGTCTTGAGGGTATGAACCTCCAGTTC 3142 || || | ||||| ||||| |||||||| ||| | || || |||||| | ||||| Sbjct 3789 GGTCATATGGATAAACAAAGCAGTTGGGCATCCAGTGTGGAAGGCATGAACATGCAGTTT 3848 Query 3143 CTGACGCACACCCTGCGCCCCCTGCTGGTGAACATAGAGCAGGAAAT-AG----GACGGT 3197 | ||| |||| || | || |||| || || || ||||| ||||| || || | Sbjct 3849 TTAACGAACACATTGAGGCCATTGCTTGTCAATATTGAGCAAGAAATCAGTCGTNTCGTT 3908 Query 3198 GCCTGCTGGACAGCGATGATGAGGTTTTCGCGGAGTTCTCTGTAGAAGGACTGCTGCGCG 3257 || | | |||||||||| || ||| ||||| ||||| ||||| | || || | Sbjct 3909 GCTTATTAAGTGGCGATGATGATTATTACGCTGAGTTTTCTGTCGAAGGGTTACTTCGAG 3968 Query 3258 CCGACAGCGCGGGCCGTGCTGCGTACTATACCAGTGCGCTCCAGAATGGGTGGATGTCCC 3317 | || || || || || ||||| |||||||| | | | || ||||| |||||| | Sbjct 3969 CAGATAGTGCAGGTCGGGCTGCTTACTATACAACATCATTACAAAATGGTTGGATGAGTC 4028 Query 3318 GCAATGACGTGCGCCGTCTTGAGAATATGCCACCGATTGAAGGGGGTGACATTTACACCG 3377 | ||||| ||| | |||||||| ||| | || || ||||| || ||||| |||||||| | Sbjct 4029 GTAATGATGTGAGGCGTCTTGAAAATTTACCGCCCATTGATGGTGGTGATATTTACACAG 4088 Query 3378 TTCAGCTCAAC 3388 |||| |||||| Sbjct 4089 TTCAACTCAAC 4099 Score = 89.7 bits (98), Expect = 1e-13 Identities = 205/306 (67%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 2342 GCCGATAAAGCCATCCAGCTATCGGCTGTATGGGCATGCGTAAGGCTGTTAAGCGAGTCT 2401 || |||||||| || || || || | |||||||| || || ||| | | || |||||| Sbjct 3012 GCGGATAAAGCAATGCAACTCTCAACCGTATGGGCCTGTGTGAGGTTACTCAGTGAGTCT 3071 Query 2402 ATTTCAACCCTTCCGCTGAAAATATACGTTCGACAG-CCTGACGGTTCGCGTAAAGCGGC 2460 |||||||| | || | ||||| ||| | ||| ||| || ||||||| || Sbjct 3072 ATTTCAACTTTGCCCATAAAAATCTACCAAAG-CAGAAGTGATGGGTCGCGTACTTTAGC 3130 Query 2461 AACAGATCATCCGGCTTATTCGATACTGTGCCGCCGACCCAATTCAGAAATGACACCATC 2520 | ||| || || | |||| | | | || | ||| ||| ||| ||||| ||||| Sbjct 3131 TAAAGAACACCCTGTTTATAGGCTGTTATGTAAGCAACCTAATATAGAGATGACGCCATC 3190 Query 2521 ACGCTTTATGTTGATGGTGGTCGCCAGTATTTGCCTACGCGGTAATGCCTTTGTCGAGAA 2580 | | || ||| | ||||| || |||||| | || || ||||| ||| ||| | || || Sbjct 3191 AAGGTTCATGCTAATGGTAGTGGCCAGTTTATGTCTGCGCGGGAATAGTTTTATTGAAAA 3250 Query 2581 GCTGTTTATCGGCAATAAGCTGGTTTCTCTGGTGCCATTGATGCCCCAGAACATGGTAGT 2640 | |||||| ||||| ||| | ||| || | | || || |||||||| || Sbjct 3251 AAAATATATCGGTCCAAAGCTTGTTGCATTGGATCCGCTACTTCCTCAAAACATGGTCGT 3310 Query 2641 AAAGCG 2646 |||||| Sbjct 3311 AAAGCG 3316 >seq27971 Length=2576 Score = 156 bits (172), Expect = 1e-33 Identities = 208/289 (72%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 4819 CACCGAAACAGCGCCTTTTCATCCGCGATCTGATCGCGCCTGGCCGCACCTCAGCACCGG 4878 |||| || || ||||| || ||||| || || || || || ||| || | |||| | Sbjct 999 CACCAAAGCAACGCCTGTTTATCCGTGAGCTTATTGCTCCGGGCAAGACTCAATCACCCG 940 Query 4879 CCATCTTCTGGGTGCAGCAAACCGGCTTCACCAATGCGGCGAAAGTTGTGCCGGAAGGCA 4938 | || ||||||||||||||||| ||||| || ||| ||| |||||||| ||| || Sbjct 939 CAATTTTCTGGGTGCAGCAAACTGGCTTTACTAATAATGCGGCTGTTGTGCCTGAAAACA 880 Query 4939 CCGCCAAGCCGTACAGCGATATCCAGTTCGCCACGCAGATCACGCCGGTCACCACCATCG 4998 | || || || ||||| ||||| | || | | | || || | || || ||||| | Sbjct 879 CAGCTAAACCATACAGTGATATTAAATTTGAGCCAAAAATTACCGCAGTAACTACCATTG 820 Query 4999 CGCACATGTTCAAGGCGTCCAAACAGATTCTGGATGACTTCGCGCAGCTGCAGTCCACTA 5058 | || |||| || || || || || |||||||||||||| | || ||||||| | Sbjct 819 CACATTTGTTTAAAGCATCTAAGCAAATTCTGGATGACTTTTCTCAATTGCAGTCACTTG 760 Query 5059 TCGACGCCGAGATGCGTTACGGACTGAAGTATGTGGAAGAACAGGAAAT 5107 | || || || ||||| |||||| |||||| ||||||||| |||||||| Sbjct 759 TGGATGCAGAAATGCGCTACGGATTGAAGTTTGTGGAAGAGCAGGAAAT 711 Score = 107 bits (118), Expect = 5e-19 Identities = 130/176 (74%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 3648 GACAACAGTATTTCTGTTTTTGATGTGATCGGGCAGGACTACTGGGGTGAAGGCGTAACA 3707 ||||||| |||||||||||| ||||| || || |||| || ||||| || || ||||| Sbjct 2262 GACAACACTATTTCTGTTTTAGATGTCATTGGTGAGGATTATTGGGGGGAGGGAGTAACT 2203 Query 3708 GCCAAACGTATCGCCGGTGCGCTTCGGGCGAT---GAATGGCGCCGACGTCACGGTCAAT 3764 || || ||||| | ||||| || ||||| || ||| | || || |||||| Sbjct 2202 GCTAAGCGTATTTCTGGTGCACTCCGGGCTATTGGGAA---CAATGATGTAGTCGTCAAT 2146 Query 3765 ATTAACTCCCCTGGCGGGGACATGTTCGAAGGCCTGGCCATCTACAACCTTCTGCG 3820 || || ||| ||||| |||||||| ||||| ||||| || |||||||| || || Sbjct 2145 ATCAATAGCCCCGGCGGTGACATGTTTGAAGGGCTGGCAATTTACAACCTACTACG 2090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120135066612444