Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq6146 154 4e-33 seq12086 80.6 7e-11 >seq6146 Length=11763 Score = 154 bits (170), Expect = 4e-33 Identities = 394/593 (66%), Gaps = 10/593 (2%) Strand=Plus/Minus Query 21975 GGATC--GGGTACTGTCGTATCACGAACTGGCTAAGATTTGGCTTGCTATTGAAAGAAGC 22032 ||||| |||||||| | ||| ||||| ||| |||||| || || |||||||| Sbjct 9979 GGATCAAGGGTACTGACATATACAGAACTAGCTGCAATTTGGAAGGCAATAGAAAGAAGT 9920 Query 22033 CGTGCGTCTACGTCAAATAAGCTACTTCATCAGATGCTTATGCTGTGGGGGGCGAGGCTC 22092 | || | || |||||||| ||| | ||||| ||| | ||||| ||||| || | Sbjct 9919 AGGGCTGCAACATCAAATAAACTATTACATCAAATGATAATGCTTTGGGGTTGCAGAATA 9860 Query 22093 TCAGAGCTTAGGCTGGCAAAAAAGACAGAATTTGACCTGCTGGAAAACGTATGGACCGTA 22152 |||||| | ||||| | | | |||| || || || ||||| |||||| | || Sbjct 9859 TCAGAGTTAAGGCTATCCACTACTTCAGAGTTCGATCTAAATGAAAAAGTATGGTCTGTC 9800 Query 22153 CCGAAAGAGCATAGCAAGATGGGTAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAG 22212 || || |||| ||||| | || || || || | || || || ||| | ||| | Sbjct 9799 CCAGAACAGCACAGCAAAACAGGAAAGGTGATTAGGCGACCTATATTCCCATCTATTGAA 9740 Query 22213 CCTTTCCTCGAAAAGGCCATGACAACGTACAATGATGTTCTTTTCCCTGGAGAAGACATA 22272 || || | || || || ||| || || ||| | | ||||| ||| | |||| Sbjct 9739 CCATTATTAGATAAAGCACTGATTACATATGGTGAAATATTATTCCCCGGACAGAACATT 9680 Query 22273 AACAAACCGATCAGCATCGCTGCAGCCAACCGATTCGTAAATAGAATAAGGGGAGGGATG 22332 || ||||| || | || ||||| ||||| ||| |||||| || ||| | ||| Sbjct 9679 AATAAACCCATGACTATAGCTGCTGCCAATAGATACGTAAAAAGGCTAAATGATTCAATG 9620 Query 22333 GATCTAGGTTACTGGCGAACACACGATTTCAGAAGAACGCTTGTTACACGTCTGTCCGA- 22391 | | | | ||||| | ||||| || |||||||| | | ||| || | || || Sbjct 9619 AGGGTTGATGATTGGCGCGCGCACGACTTTAGAAGAACAATCGCTACGCGCTTATCTGAA 9560 Query 22392 GATGAATGTCGAGCCTCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAAT 22451 || | || | || ||||| | |||| |||||| || |||||| | | || || || Sbjct 9559 GAAGGG-GTAGCCCCGCATGTAATTGAGAAAATGCTAGGGCATGAAATGGCTGGAATCAT 9501 Query 22452 GTCCGTGTACAATAAACACGACTGGATAGAGGCTCAGCGCAAA---GCGTATGAGCTTCA 22508 | | ||||| ||||||||||||||||| || | | | ||| ||||| || | || Sbjct 9500 GGCTGTGTATAATAAACACGACTGGAT-TAG--TGAACAAAAAGATGCGTACGAAATACA 9444 Query 22509 CGCTGATAAATTGTTCTGGCACATCAGGAGCATTTCTGATTAACGCCACCGTT 22561 || |||||||| ||||||||||| | || | | |||| || | ||||| || Sbjct 9443 TGCAGATAAATTATTCTGGCACATTAAGAACTCTGCTGACTAGCACCACCATT 9391 >seq12086 Length=38917 Score = 80.6 bits (88), Expect = 7e-11 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 35664 AGGCGAACAAGGTAAGCGAGATAGTATTGTTGTTGTTGCCCAGTTGTCGCCAGAGTTCAC 35723 ||| ||| |||||||||| || || ||| |||| ||||| || || ||||| || || || Sbjct 1686 AGGTGAAGAAGGTAAGCGCGACAGCATTATTGTAGTTGCTCAATTATCGCCTGAATTTAC 1627 Query 35724 CGCTCGCCTTGTTGACCGCTGGCGAGATCTTGAA 35757 ||||| || |||||||||||| ||| || ||| Sbjct 1626 AGCTCGACTAGTTGACCGCTGGAAAGAACTCGAA 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130099140753024