Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq6146 143 7e-30 >seq6146 Length=11763 Score = 143 bits (158), Expect = 7e-30 Identities = 458/700 (65%), Gaps = 18/700 (3%) Strand=Plus/Minus Query 21823 CAACTAAGATCAGCAATTAGTTGGTGCATGCGGCGTCAGTTGATAGATAGTTGCGCAATT 21882 ||| | | |||||| |||| ||||| || |||||||||| || ||| |||| |||| Sbjct 10081 CAATTGAAATCAGCCATTAACTGGTGTATTAGGCGTCAGTTTATTGATGATTGC--AATT 10024 Query 21883 --ATGAGCATCCAGCCAAGGGACTTCGGCTCCCGCGCT-GAGGTAGGGGATC--GGGTAC 21937 |||| || || || || | || ||| ||| | ||||| |||||| Sbjct 10023 TAATGAAGATAAGCCCTAGAGATGTTGGGGAAAAGGCTAGAGTT---GGATCAAGGGTAC 9967 Query 21938 TGTCGTATCACGAACTGGCTAAGATTTGGCTTGCTATTGAAAGAAGCCGTGCGTCTACGT 21997 || | ||| ||||| ||| |||||| || || |||||||| | || | || | Sbjct 9966 TGACATATACAGAACTAGCTGCAATTTGGAAGGCAATAGAAAGAAGTAGGGCTGCAACAT 9907 Query 21998 CAAATAAGCTCCTTCATCAGATGCTTATGCTGTGGGGGGCGAGGCTCTCAGAGCTTAGGC 22057 ||||||| || | ||||| ||| | ||||| ||||| || | |||||| | |||| Sbjct 9906 CAAATAAACTATTACATCAAATGATAATGCTTTGGGGTTGCAGAATATCAGAGTTAAGGC 9847 Query 22058 TGGCAACAAAGACAGAATTTGACCTGCTGGACAACGTATGGACCGTACCGAAAGAGCATA 22117 | | || | |||| || || || || || |||||| | || || || |||| | Sbjct 9846 TATCCACTACTTCAGAGTTCGATCTAAATGAAAAAGTATGGTCTGTCCCAGAACAGCACA 9787 Query 22118 GCAAGATGGGTAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTTCTCGAAA 22177 |||| | || || || || | || || || ||| | ||| | || || | || | Sbjct 9786 GCAAAACAGGAAAGGTGATTAGGCGACCTATATTCCCATCTATTGAACCATTATTAGATA 9727 Query 22178 AGGCCATGACAACGTACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGATCA 22237 | || ||| || || ||| | | ||||| ||| | |||| || ||||| || | Sbjct 9726 AAGCACTGATTACATATGGTGAAATATTATTCCCCGGACAGAACATTAATAAACCCATGA 9667 Query 22238 GCATCGCTGCAGCCAACCGATTCGTAAACAGAATAAGGGGAGGGATGGATCTAGGTTACT 22297 || ||||| ||||| ||| |||||| || ||| | ||| | | | | | Sbjct 9666 CTATAGCTGCTGCCAATAGATACGTAAAAAGGCTAAATGATTCAATGAGGGTTGATGATT 9607 Query 22298 GGCGAACACATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCGA-GATGAATGTCGAG 22356 |||| | || || || |||||||| | | ||| || | || || || | || | Sbjct 9606 GGCGCGCGCACGACTTTAGAAGAACAATCGCTACGCGCTTATCTGAAGAAGGG-GTAGCC 9548 Query 22357 CCTCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTATACAAT 22416 || ||||| | |||| |||||| || |||||| | | || || ||| | || || ||| Sbjct 9547 CCGCATGTAATTGAGAAAATGCTAGGGCATGAAATGGCTGGAATCATGGCTGTGTATAAT 9488 Query 22417 AAACACGACTGGATAGAGGCTCAGCGCAAA---GCGTATGAGCTTCACGCTGATAAATTG 22473 |||||||||||||| || | | | ||| ||||| || | || || |||||||| Sbjct 9487 AAACACGACTGGAT-TAG--TGAACAAAAAGATGCGTACGAAATACATGCAGATAAATTA 9431 Query 22474 TTCTGGCACATCAGGAGCATTTCTGATTAACGCCACCGTT 22513 ||||||||||| | || | | |||| || | ||||| || Sbjct 9430 TTCTGGCACATTAAGAACTCTGCTGACTAGCACCACCATT 9391 Score = 102 bits (112), Expect = 2e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 25232 TCACGCACTGTCTTGCGGTTGGCATCAATTAGCTTTGGAATTTCCTTCAGTTCAGCAACA 25291 || ||||| || ||| ||||| || ||||||||||| ||||| || | || || || Sbjct 2346 TCTCGCACAGTTCGGCGATTGGCGTCGATTAGCTTTGGTATTTCTTTTAACTCTGCTACC 2287 Query 25292 AGGTCTTTTCCAAGACCATCGAGATATGTTTTCGTCTGCGCAACTTTATACGCCAGAGAA 25351 | |||||| || || ||||| || || ||||| | || || ||||| || |||| ||| Sbjct 2286 AAGTCTTTACCGAGCCCATCAAGGTAAGTTTTTGATTGAGCGACTTTGTAGGCCAATGAA 2227 Query 25352 GCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAGGCACAAAGGACATAACTTC 25407 || || ||||| | || || | || |||| |||||| | ||| || ||||||| Sbjct 2226 GCAATTTCCTTGCGACCTTTAACAGTGGTGACATCAGGAATAAAAGAATTAACTTC 2171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126478167421680