Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq6146 158 3e-34 >seq6146 Length=11763 Score = 158 bits (174), Expect = 3e-34 Identities = 390/587 (66%), Gaps = 10/587 (2%) Strand=Plus/Minus Query 21978 GGGTACTGTCGTATCACGAACTGGCTAAGATTTGGCTTGCTATTGAAAGAAGCCGTGCGT 22037 |||||||| | ||| ||||| ||| |||||| || || |||||||| | || Sbjct 9972 GGGTACTGACATATACAGAACTAGCTGCAATTTGGAAGGCAATAGAAAGAAGTAGGGCTG 9913 Query 22038 CTACGTCAAATAAGCTCCTTCATCAGATGCTTATGCTGTGGGGGTCGAGGCTCTCAGAGC 22097 | || |||||||| || | ||||| ||| | ||||| ||||| | || | |||||| Sbjct 9912 CAACATCAAATAAACTATTACATCAAATGATAATGCTTTGGGGTTGCAGAATATCAGAGT 9853 Query 22098 TTAGGCTGGCAACAAAGACAGAATTTGACCTGCTGGACAACGTATGGACCGTACCGAAAG 22157 | ||||| | || | |||| || || || || || |||||| | || || || Sbjct 9852 TAAGGCTATCCACTACTTCAGAGTTCGATCTAAATGAAAAAGTATGGTCTGTCCCAGAAC 9793 Query 22158 AGCATAGCAAGATGGGTAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTTC 22217 |||| ||||| | || || || || | || || || ||| | ||| | || || Sbjct 9792 AGCACAGCAAAACAGGAAAGGTGATTAGGCGACCTATATTCCCATCTATTGAACCATTAT 9733 Query 22218 TCGAAAAGGCCATGACAACATACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAAC 22277 | || || || ||| ||||| ||| | | ||||| ||| | |||| || |||| Sbjct 9732 TAGATAAAGCACTGATTACATATGGTGAAATATTATTCCCCGGACAGAACATTAATAAAC 9673 Query 22278 CGATCAGCATCGCTGCAGCCAACCGATTCGTAAATAGAATAAGGGGAGGGATGGACATAG 22337 | || | || ||||| ||||| ||| |||||| || ||| | ||| | | Sbjct 9672 CCATGACTATAGCTGCTGCCAATAGATACGTAAAAAGGCTAAATGATTCAATGAGGGTTG 9613 Query 22338 GTTACTGGCGAACACATGATTTCAGAAGAACGCTTGTTACACGGCTGTCCGAGATGAATG 22397 | | ||||| | || || || |||||||| | | ||| || | || || ||| | Sbjct 9612 ATGATTGGCGCGCGCACGACTTTAGAAGAACAATCGCTACGCGCTTATCTGAA--GAAGG 9555 Query 22398 TCGAGCCCC--ATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGT 22455 |||||| |||| | |||| |||||| || |||||| | | || || ||| | || Sbjct 9554 GGTAGCCCCGCATGTAATTGAGAAAATGCTAGGGCATGAAATGGCTGGAATCATGGCTGT 9495 Query 22456 GTACAATAAACACGACTGGATAGAGGCTCAGCGCAAA---GCGTATGAGCTTCACGCTGA 22512 ||| ||||||||||||||||| || | | | ||| ||||| || | || || || Sbjct 9494 GTATAATAAACACGACTGGAT-TAG--TGAACAAAAAGATGCGTACGAAATACATGCAGA 9438 Query 22513 TAAATTGTTCTGGCACATCAGGAACATTTCTGGTTAACGCCACCGTT 22559 |||||| ||||||||||| | |||| | ||| || | ||||| || Sbjct 9437 TAAATTATTCTGGCACATTAAGAACTCTGCTGACTAGCACCACCATT 9391 Score = 109 bits (120), Expect = 1e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 26081 TCACGCACTGTCTTGCGGTTGGCATCAATTAGCTTTGGAATTTCCTTCAGTTCAGCAACA 26140 || ||||| || ||| ||||| || ||||||||||| ||||| || | || || || Sbjct 2346 TCTCGCACAGTTCGGCGATTGGCGTCGATTAGCTTTGGTATTTCTTTTAACTCTGCTACC 2287 Query 26141 AGGTCTTTGCCAAGACCATCGAGATATGTTTTCGTCTGCGCAACTTTATACGCCAGAGAA 26200 | |||||| || || ||||| || || ||||| | || || ||||| || |||| ||| Sbjct 2286 AAGTCTTTACCGAGCCCATCAAGGTAAGTTTTTGATTGAGCGACTTTGTAGGCCAATGAA 2227 Query 26201 GCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAGGCACAAAGGACATAACTTCACGT 26260 || || ||||| | || || | || |||| |||||| | ||| || ||||||| | Sbjct 2226 GCAATTTCCTTGCGACCTTTAACAGTGGTGACATCAGGAATAAAAGAATTAACTTCTTGC 2167 Query 26261 TCAACCTTTTGAAGGATTTCTTC 26283 || || || ||| ||| ||||| Sbjct 2166 TCTACTTTACGAATGATATCTTC 2144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128323840223964