Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019769.1 Length=38964 Score E Sequences producing significant alignments: (Bits) Value seq13007 114 3e-21 seq12086 82.4 2e-11 seq1477 82.4 2e-11 >seq13007 Length=9541 Score = 114 bits (126), Expect = 3e-21 Identities = 151/202 (75%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 20575 TTGTGCCGTATTTGTGCCAT--TGCGACTTATAATCGCATCGATTTTGCTCGCGTGCTCG 20632 ||||||| |||||||| ||| || ||| || | | | ||||| || | || || || Sbjct 9344 TTGTGCCATATTTGTGTCATCGTGTGAC--ATTAGCTCGTCGATCTTCATTGCATGTTCA 9401 Query 20633 GTGAGATGCC-CGGCTGAAAGGTGGGCGTATCTTTGAACCATTTCGAGAGTTTCCCATCC 20691 || ||||| |||| || || || || ||| |||||||| | | ||||||||| Sbjct 9402 GTTAGATGATTCGGCGCTAAA-TGAGCATACCTTCTCACCATTTCTATTGATTCCCATCC 9460 Query 20692 TCCCATCTCTTTAAGTGCA-AGAAGAGAGACACCGGACTGAACCAGCCAGCTTGCCCAAG 20750 |||||| |||| ||||||| | || || || ||||||||||| ||||| || ||||||| Sbjct 9461 TCCCATTTCTTGAAGTGCAGATAATGGA-ACTCCGGACTGAACAAGCCAACTCGCCCAAG 9519 Query 20751 TATGCCTCAGGTCATGGAAGCG 20772 ||||||||| |||||| || || Sbjct 9520 TATGCCTCAAGTCATGAAATCG 9541 >seq12086 Length=38917 Score = 82.4 bits (90), Expect = 2e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 32141 GGCGAACAAGGAAAGCGAGACAGCATTATTGTCGTCGCCCAGTTGTCGCCAGAGTTCACC 32200 || ||| |||| ||||| |||||||||||||| || || || || ||||| || || || Sbjct 1685 GGTGAAGAAGGTAAGCGCGACAGCATTATTGTAGTTGCTCAATTATCGCCTGAATTTACA 1626 Query 32201 GCTCGCCTTGTTGACCGCTGGCGAGAGCTTGAA 32233 ||||| || |||||||||||| ||| || ||| Sbjct 1625 GCTCGACTAGTTGACCGCTGGAAAGAACTCGAA 1593 >seq1477 Length=12152 Score = 82.4 bits (90), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 21563 CTCCACGCTTCTGCTTTTAGACGATCGTGAAGTTCTTGCGCTTGCCTTTTGTCCGATGTT 21622 ||||| || |||||||||| | || || | ||||||||||||| ||||| || ||| Sbjct 8923 CTCCATGCCTCTGCTTTTAACTGGTCATGTAACTCTTGCGCTTGCCGCTTGTCTGACGTT 8982 Query 21623 TCAAGAGAGCGTCTAA--CTCTTGATCCATCTGGCGCGACGAAATCACAGTGCCACGTGC 21680 ||||| ||||||| | |||| || | ||||| ||||||||||||||||| | | Sbjct 8983 TCAAGGCTACGTCTAATGCGCTTG--CCGTTTGGCGAAACGAAATCACAGTGCCAAATTC 9040 Query 21681 CACCGCGTAGTTTGAT 21696 | | | | ||||||| Sbjct 9041 CGCTCCTTTGTTTGAT 9056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124514141250792