Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq17986 138 3e-28 seq13007 104 7e-18 seq12086 95.1 4e-15 >seq17986 Length=4474 Score = 138 bits (152), Expect = 3e-28 Identities = 141/183 (77%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 34647 AGGTAAA-ACATGAGACTCAACAGTATTCATGTAAAAAGCCTCGCCATCAACTCTTCAAA 34705 |||| || |||||| || ||| |||||||| ||| || || |||| || || || Sbjct 1951 AGGTCAACACATGAAGCTATCCAGCATTCATGTTAAATCACTGGCTGTCAATTCCTCCAA 2010 Query 34706 CATCTCAACTGAAACCATCGACGGTGACGAACATATCGTCATTCGTGGCGTCGTACCTGT 34765 |||||||||||||| ||||| ||||| || |||||||||||||| ||||| || ||||| Sbjct 2011 TATCTCAACTGAAACTATCGATGGTGATGAGCATATCGTCATTCGCGGCGTTGTGCCTGT 2070 Query 34766 CGTGGATGACGTTGTCATGAATGGCGGGTTGTATCCGGCTGAGGAGATTAACAAGAGCTT 34825 | | ||||| ||||| ||||| || || || ||||| || |||||||||| || || Sbjct 2071 CATCGATGATGTTGTGATGAACGGTGGTTTATATCCTGCCAGTGAGATTAACAGTAGTTT 2130 Query 34826 TAA 34828 ||| Sbjct 2131 TAA 2133 >seq13007 Length=9541 Score = 104 bits (114), Expect = 7e-18 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 7603 GTCTATTTGCTTCGCGTGCTCGGTCAGGTGATTAGGTGCCAGATGTGCATAACGGCGGAC 7662 ||| || | | | || || || || || ||||| || || | ||| ||||| | | || Sbjct 9380 GTCGATCTTCATTGCATGTTCAGTTAGATGATTCGGCGCTAAATGAGCATACCTTCTCAC 9439 Query 7663 CATTTCTATTGACTCCCATCCTCCCATCTCCTGAAGAACCGAAATCGGGACGCCCGCCTG 7722 |||||||||||| |||||||||||||| || ||||| | || | || || || | ||| Sbjct 9440 CATTTCTATTGATTCCCATCCTCCCATTTCTTGAAGTGCAGATAATGGAACTCCGGACTG 9499 Query 7723 AACTAACCAGCTTGCCCAAGTGTGTCTCAGGTCATGGAAGCG 7764 ||| | ||| || |||||||| || |||| |||||| || || Sbjct 9500 AACAAGCCAACTCGCCCAAGTATGCCTCAAGTCATGAAATCG 9541 >seq12086 Length=38917 Score = 95.1 bits (104), Expect = 4e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 28167 TATGTGTTTGAAGGTGAGCAGGGTAAGCGCGACAGTATTATTGTTGTTGCTCAGCTTTCG 28226 ||| | ||| |||||| | |||||||||||||| |||||||| |||||||| | ||| Sbjct 1697 TATTTATTTTCAGGTGAAGAAGGTAAGCGCGACAGCATTATTGTAGTTGCTCAATTATCG 1638 Query 28227 CCTGAATTTACCGCGCGCCTGGTTGATCGCTGGCAGGAGCTTGAA 28271 ||||||||||| || || || ||||| |||||| | || || ||| Sbjct 1637 CCTGAATTTACAGCTCGACTAGTTGACCGCTGGAAAGAACTCGAA 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152173643367516