Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq13683 102 2e-17 seq12178 100 5e-17 seq13268 80.6 5e-11 >seq13683 Length=3702 Score = 102 bits (112), Expect = 2e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 2410 AGCCCGATAAGGTGGCGACTGCAGGGTTTTGCATCCGCTATCAGGCGCTCCAGCTCGGTA 2469 || ||||||||||| || || ||||||||||| |||| || | ||| | Sbjct 1503 AGACCGATAAGGTGACGGCTCGCCGGTTTTGCATCAAAAATCAATGCTTCTAACTCTTGA 1444 Query 2470 TACATTTCCTGCGTAATGCCGGTATCCAGCACGCCCACGTCCAGGCGAAACGTGCCGGGT 2529 |||||||| | ||||| || || || ||||| || | || || ||||||||||||| Sbjct 1443 TACATTTCTTCAGTAATACCCGTTTCAAGCACCCCGATATCAAGACGAAACGTGCCGGCG 1384 Query 2530 GCCTCACCGGTTTTCCACCACTCAATGATGCGGATCAGATAGCCGAGCGGCTCCACCACG 2589 | || ||||||||||||||||| | || || | ||| || | ||||| ||||| Sbjct 1383 GTTTCGTTAGTTTTCCACCACTCAATAACCCGAATTAAATAACCCAATGGCTCAACCACA 1324 Query 2590 CGACGCAGCGAGCCGATGGTGCCTTTATG 2618 ||||||| | ||| || || ||||| || Sbjct 1323 CGACGCAATGCGCCAATCGTACCTTTGTG 1295 >seq12178 Length=2234 Score = 100 bits (110), Expect = 5e-17 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3873 ACGCGCGGCTCCCACTGCAAAATCGCCATATAGCAGGCCGACATAATTTGCAGGCGCAGC 3932 ||||| |||||||| |||| | |||||||||||| || |||||||| || ||||| Sbjct 1413 ACGCGTGGCTCCCATTGCATTAACGCCATATAGCACGCACTCATAATTTTGAGTCGCAGT 1354 Query 3933 GCCGCGTTCTGCGGCTGGTCAATCAGCGCTGACAGCAGCGAGCCATAGCTGCGGCGCATA 3992 || | ||| || ||||||||||||| | ||| ||| ||||| || |||||||| Sbjct 1353 GCAGGGTTTTGTGGCTGGTCAATCAAGTCATACAACAGTGAGCCGTATTGCCGGCGCATC 1294 Query 3993 ATCCGGGAGCCGATCGGCGT 4012 | ||| || || |||||||| Sbjct 1293 ACCCGCGAACCAATCGGCGT 1274 >seq13268 Length=3871 Score = 80.6 bits (88), Expect = 5e-11 Identities = 110/154 (71%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 19825 TGAATTACCAGCCGGTCAACTTACCCACGTGCTGCGACATACGTTTGCAAGTCACTTTAT 19884 ||| || |||| ||||||| ||| ||||| || | ||||| || ||||||||||| || Sbjct 3240 TGATTTGCCAGACGGTCAAGCTACGCACGTTCTTAGGCATACTTTCGCAAGTCACTTCAT 3181 Query 19885 GATGAACGGGGGAAACCTTTTAGTTTTGCAGCGGGTATTAGGCCATACAGACATAAAAAT 19944 |||||| || || || || | | | |||| | ||||||| || | | || || Sbjct 3180 GATGAATGGTGGCAATATTGTTGCTCTGCAACAAATATTAGGTCACGCCAATATTCAACA 3121 Query 19945 GACTATGCGATATGCTCACTTTGCGCCCGATCAT 19978 ||| ||| ||||||||||| || || ||| || Sbjct 3120 GACAATGGCTTATGCTCACTTAGCCCCTGATTAT 3087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94445988145992