Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq12086 141 2e-29 >seq12086 Length=38917 Score = 141 bits (156), Expect = 2e-29 Identities = 402/609 (66%), Gaps = 23/609 (4%) Strand=Plus/Minus Query 28529 TAGATAATGCAGCGAACGTCGCTGTCGAACCCAGCCACCAGCACGCCTACGCTAACGATG 28588 || || ||||| ||||| || || || || || || || ||| || || |||| ||| Sbjct 8015 TAAATGATGCAACGAACATCACTATCAAAACCCGCTACAAGCGTTCCAACATTAACAATG 7956 Query 28589 ATTTTTGTCGCGCCAGTCTCAAAGCGATGGATTATGGTCTGACGTTCTTCAACCGGAGTG 28648 || || || || || || || || || || ||| |||| || ||| || || Sbjct 7955 ATCTTGGTTGCACCCTGTTCGAAACGGTGAATGATGACTCGACGCTCATCATGTGGTGTA 7896 Query 28649 TCGGCAGTCATCACCTCAGCATTAACGCCAGCCAGGTTGAACTGGATGGTCAGGTAATTG 28708 || || || || || || ||||| || || | | || || | ||| | ||||| Sbjct 7895 TCAGCTGTAATGACTTCCGCATTTACCCCTGAGCGATTAAAAGCAACGGTGACATAATTT 7836 Query 28709 GCATGAGCT-ACATTGACGCAGAAAGCTATAGTCGGCAGATCGCGTCCATTCTCCAACCA 28767 ||||| ||| ||| ||||||| ||| || || || || | ||||| ||| ||| Sbjct 7835 GCATG-GCTGACAGTGACGCAAAAACAGATGGTTGGTAGGTTTTCACCATTAGCCAGCCA 7777 Query 28768 GTTCTGGACGATATCTCCCACCAGCGTGGAGCCGCACATAATTTCAGCCAGCTGTGCCTC 28827 ||| | ||| | ||| || ||||| | || ||||||||||||| | || ||||| Sbjct 7776 GTTATCGACCACATCGCCAACCAGATCCGCACCTGACATAATTTCAGCGATCTCAGCCTC 7717 Query 28828 GTTGTAGTCCTTGCCGTACTCAA-GAGAGGATGAC-GTTTTAACCCC-GTTAAGATCCGG 28884 || || || | ||| | || | | | ||| | ||| || | ||| |||||| Sbjct 7716 TTTATAATCACTACCGAATTCCTCGCTACG--GACTGATTTCACTTTTGATAA-ATCCGG 7660 Query 28885 CTTGGTTGGTGCGTAAAACTCATAATTGCTCAGGTCACCGCGCTGAATCAGCTCAGCGAT 28944 ||| || ||||||||||| || || || || || || || |||||||| ||||| || Sbjct 7659 CTTTGTCGGTGCGTAAAATTCGTATTTACTTAGATCCCCACGCTGAATAAGCTCCTTCAT 7600 Query 28945 GGTGGTCGGTTTGATGAGTCGGTCATAGTATTTACCCAAGAACGGGGAGAACGGGGTACC 29004 ||||| |||||||| || | || || || | ||| | |||||||| || || || || Sbjct 7599 CGTGGTTGGTTTGATCAGCCTTTCGTAATACTCACCAAGAAACGGGGAAAAAGGTGTTCC 7540 Query 29005 CGACAGACCAATGACTTTCACGCCTTTAGCGCGCAGGCGATCAATGTCCTGCAGGATGCG 29064 || | || || ||||| | | || || | || |||| | | || || Sbjct 7539 AGATAACCCGATTACTTTTAGGTCTGTATCACG---------AATGACTTCGAGTAT--- 7492 Query 29065 tttttttCGG---AGGTGCGCTTCGTCGATGATCAGGAGATCGATGTTGTCTGGGAAGAC 29121 ||| || ||| | || || ||||||||||| || | ||| |||||||| || || | Sbjct 7491 TTTCTTACGGCGTAAATGGGCCTCGTCGATGATGAGTAAATCAATGTTGTCAGGAAACTC 7432 Query 29122 GCGGCGAAT 29130 || ||||| Sbjct 7431 CCGACGAAT 7423 Score = 82.4 bits (90), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29222 CCATATTCAACAAAACGATTCGCTGTCTGGCCAATCAGAATGGTATATGGCGCACAAAAG 29281 ||||| || |||||| | |||||| || | |||||| | || ||||||||||| || Sbjct 7290 CCATACTCTTGAAAACGCTCCGCTGTTTGAGCGATCAGATTTGTGTATGGCGCACAGAAC 7231 Query 29282 AGTACACGCATACCACGGCTGACGAACCCGGCGACAATGAAAGCGGCCAGCCCCGTTTTA 29341 | || |||||| || ||| | | ||| || || || || ||||| || ||| Sbjct 7230 ATAACTCGCATATTGCGCTTGATGTAACCGTTTGTGATAAATGCCGCTAGCCCTGTCTTA 7171 Query 29342 CCGCTGCCGGTCGGGGAGTACACCATGAAGGTTTCTGTATCCTTCCAGTTACGGCGCAGC 29401 ||||| || || ||| || | ||| || || | | ||||||||| | |||| | Sbjct 7170 CCGCTCCCTGTTGGGCTATAAATCATAAACGTGCGGTTTTGCTTCCAGTTTTGACGCAAC 7111 Query 29402 -TGGTTCAGCGCTCGTTCCTGTGCAAAATTCGGTGTGAT 29439 | | | | | | ||||||||||||||||| ||||| || Sbjct 7110 ATAGCTAAAC-CGCGTTCCTGTGCAAAATTTGGTGTAAT 7073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124667680756008