Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq3187 120 3e-22 seq27670 95.1 1e-14 >seq3187 Length=10884 Score = 120 bits (132), Expect = 3e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 40645 TGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCTGGAAACATATTCAAACCGCTG 40703 ||| ||||||||| | || || || ||| ||||| |||| || || | || || || | Sbjct 7731 TGGCGGTGAAGCTTTCCACACAGGCTGT-ATTCCGTTCTACAAGCACTTCCAGACTGCGG 7673 Query 40704 TTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCT 40763 ||||||| || || || ||||| || |||||||||||||| || | | ||| || | | Sbjct 7672 TTAAATCTTGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTT 7613 Query 40764 GGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACC 40823 |||| || |||||||||| ||| | || |||| |||||| || || |||| |||| Sbjct 7612 GGCACCTTGAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACC 7553 Query 40824 GCGTTCGTCATCTTGATTATGGTGTACA 40851 | ||||| ||| | || || ||||| || Sbjct 7552 GAGTTCGCCATATGGACTACGGTGTGCA 7525 >seq27670 Length=3875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 50889 CCGCGAAACTCTCCTGGATGCGGTTGAACATCCTGAAAAATACCCACAGTTAACGATCCG 50948 ||| |||| || | || ||| | ||| | || || ||||| |||||| | || ||||| Sbjct 1607 CCGTGAAATGCTGTTAGAAGCGATGGAAAACCCAGAGAAATATCCACAGCTGACTATCCG 1548 Query 50949 TGTTTCTGGTTATGCAGTGCGTTTTAACTCACTGACCCCTGAACAGCAACGCGACGTTAT 51008 ||| || ||||||||||||||||||||||||||||| ||||| || | |||||||| Sbjct 1547 TGTATCAGGTTATGCAGTGCGTTTTAACTCACTGACTAAAGAACAACAGCAAGACGTTAT 1488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557762269803280