Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3370 215 3e-50 seq6315 181 7e-40 seq15048 131 1e-24 seq1101 127 1e-23 seq3053 107 1e-17 >seq3370 Length=4466 Score = 215 bits (238), Expect = 3e-50 Identities = 382/548 (70%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| ||| || | ||| | ||| |||| ||||| | Sbjct 4436 TTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAACATGGAAAAGTTG 4377 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| |||||||| ||||| || || | || || || || |||||| | || || |||| Sbjct 4376 AAATTATTGCCAACGACCAGGGCAACCGTACCACTCCGTCGTATGTTGCCTTCACCGAAA 4317 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 |||||| ||| ||||| ||||| || ||| |||| | || || || || || | Sbjct 4316 CTGAACGTCTCATTGGTGATGCAGCCAAAAATCAGGTCGCCATGAACCCAACCAACACCA 4257 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 |||| |||||||| | ||||||||||| || || || ||| || | || ||||| || | Sbjct 4256 TTTTCGATGCTAAGCGTTTGATTGGTCGCAAATTCGAGGATGCCGCCGTGCAATCCGACA 4197 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCAAT 474630 || || ||||| || ||||| | | | || ||| || || | || || | Sbjct 4196 TGAAGCACTGGCCCTTCGAGGTGGTTAGCGCTGATGGCAAGCCCAAGATCCAGGTTGTCT 4137 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || |||| ||||| ||||| | |||| Sbjct 4136 ACAAGGACGAG-AAGAAGACTTTCTTC-CCTGAGGAAATCTCTTCGATGGTCCTGACCAA 4079 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | || ||||| ||||| ||| | |||| || || ||| Sbjct 4078 GATGAAGGAGACCGCCGAG-GCCTA-CTTGGGCAAGACAGTCAGCAATGCTGTGATCACT 4021 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || || |||||||| || || || ||||| || | ||||| Sbjct 4020 GTCCCGGCCTACTTCAACGACTCACAACGTCAGGCTACCAAGGATGCCGGTACCATTGCC 3961 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | ||||| || ||||| || || || || || || || || | || ||||| | Sbjct 3960 GGTTTGAATGTGTTGCGTATCATCAACGAGCCCACTGCCGCTGCCATCGCCTATGGCTTG 3901 Query 474869 GATAAGAA 474876 || ||||| Sbjct 3900 GACAAGAA 3893 >seq6315 Length=62450 Score = 181 bits (200), Expect = 7e-40 Identities = 359/523 (69%), Gaps = 24/523 (5%) Strand=Plus/Plus Query 297136 TATTGGGGAACACCAATTCCAATTTGGAAATCTGATGATGGTGAAGAAATAATTTGTATT 297195 || |||||||| || ||||| ||||||| ||| | |||| ||||| |||||| || Sbjct 52992 TACTGGGGAACGCCTATTCCGATTTGGA----TGAACA--GTGATGAAATTATTTGTGTT 53045 Query 297196 GGTTCACTTGAAGAATTAAAAGAATTTTCAGGAATTGATAATATTAATGATTTACATATT 297255 || || |||||||| || | | || || | | | | | |||||||| | Sbjct 53046 GGAAGTATTAAAGAATTAGAATCACTATCTGGCA---AAACAGTGACAGATTTACACAGA 53102 Query 297256 GATAAAATTGATCAAATAAAAATTCCTTCTCGTAAA---GGAAAAG-GCATGTTATCTCG 297311 || || ||||| | || ||||||| || || | ||||| || | ||| || Sbjct 53103 GAAAATATTGACAATATTGAAATTCCATCGGCTATACCTGGAAATCCGCCT-TTAAAACG 53161 Query 297312 TGTTACCGGTGTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCA 297371 | | | ||| || || ||||||||||| || ||||||||||| | || || || Sbjct 53162 GATAGCTGCTGTATTTGACTGTTGGTTTGAGTCGGGTTCTATGCCATTTGCACAGCAACA 53221 Query 297372 TTATCCTTTTGAAAATTCCGAA-ATTTTAGACACTTCACAAGATTATATTGCAGATTTTA 297430 || ||||||||| ||| || |||||| | ||| || | ||| || |||| Sbjct 53222 TTTTCCTTTTGAGAATGAGAAAGATTTTA------TGTCAAACTT-TCCTGCTGACTTTA 53274 Query 297431 TAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAG 297490 || ||||| ||||||||||||| | ||||||||||| || ||||||| | ||||||| Sbjct 53275 TAGCAGAAGGAATTGATCAAACACGTGGTTGGTTTTACACGCTATTAGTAATATCTACAG 53334 Query 297491 CTATATTTAACAAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCAGCTG 297550 | | ||||| || | | ||||| ||| |||| | | || | ||| ||| || | Sbjct 53335 CACTTTTTAATAAGGCGCCGTTTAAGAATTTAATCGCGAACGGTTTGGTTCTCGCTGCCG 53394 Query 297551 ATGGACAAAAAATGTCAAAAAGTAAAGGTAATTATCCTGATCCAAATATTTTGATGGATA 297610 | || ||||||||||||||| ||||| || ||||| ||||||| | | | | | Sbjct 53395 ACGGCCAAAAAATGTCAAAACGTAAAAAGAACTATCCAGATCCAATGGATGTCGTCAACA 53454 Query 297611 AATATGGTGCAGATACTTTACGTCTTTATTTATTATCAACACC 297653 |||||||||| ||| | || |||||||||||| |||||| || Sbjct 53455 AATATGGTGCCGATGCGTTGCGTCTTTATTTA--ATCAACTCC 53495 >seq15048 Length=4365 Score = 131 bits (144), Expect = 1e-24 Identities = 882/1410 (63%), Gaps = 36/1410 (3%) Strand=Plus/Plus Query 591485 AATTGATTAGCACTTGAAGCCGGTTTACCTCTTAAATAATACATTCCCGTTTTAAGTCC- 591543 |||||| | ||| | | || |||||| ||| | ||||||||||| ||||| || || Sbjct 1295 AATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAGGTAATACATTCCAGTTTTTAGACCA 1354 Query 591544 --TTTGCGATATGCATAAAATAGACATGAATTTAATTTGACAAAATCTGGTTTCTCAATA 591601 ||| | | ||| | || || || |||| || || ||| ||| | ||| | Sbjct 1355 GCTTTCC---ACGCAAAGAAATGAATCGATGTTAACTTCCCATAATTTGGCTCTCCAACA 1411 Query 591602 AATATATTCATACTTTGTGTTTGATCTATAAATGGAGCTCGATCAGCTGCCATATCAATG 591661 ||||| | || ||||||| ||||||| ||| |||||| ||||| ||| Sbjct 1412 TGAATATTAAATGACTGGCTTTGATCGATAAATGCTCCTCTATCAGCAGCCATTAAAATT 1471 Query 591662 ATAGATTGTTGTGGAATTTCCCAAACTGTTCTATAAATATTTTTAATATTTTGTGGTATA 591721 | |||| || ||||||||||| ||| | |||| || || |||||||||||| Sbjct 1472 GTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAGATCCCGTATGTTTTGTGGTATA 1531 Query 591722 TTNNNNNNNNNTGCTATGGATCCTTGATAATATTTTATAAGATCCACCATATCTGAATTC 591781 | | ||||| || | | || |||| | ||| | | || | Sbjct 1532 CTTTCGATATTTTGAATGGAACCACGGCTAGATATTATTTCGTTTTTCATTTGTTCATCC 1591 Query 591782 CATAAACCGAGTTCCATTAAATCTTTAATTAGATATTTGTTAATGACATAATAATCTCCT 591841 || ||| | ||||| ||| |||| | | || | | ||||| || | | | || || Sbjct 1592 CACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGATGGTTAACCACTTGAAATTCGCCC 1651 Query 591842 GCTAAAGTACTT--CTTGAATAAATATTTTCGGTAAATGGTTCAATACATTCATTATATC 591899 | || |||| | | ||||||||| ||| | ||||||| | |||| |||| || Sbjct 1652 GACAA--TACTCGCCGCGTGTAAATATTTGACGTATACGGTTCAAAAGATTCGTTATTTC 1709 Query 591900 CTTTAATTTGAGATGTACTTGCTGTTGGCATACATGTAGTAGTTAAACTGTTTCTAACAC 591959 | ||| || | || |||||||||||| || | || | ||| || | || Sbjct 1710 CCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCACAAGTAGAGAGTTCCTTATAC 1769 Query 591960 CATATATCATTATCTGTTCCCGAAGAGTTTTCCAATCCCACATTCCACTTAATTTATCTT 592019 ||||| || |||| | | | | |||||||||||| | || | | Sbjct 1770 CATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCCACAA---ATTTGTAGGAGTTA 1826 Query 592020 CACCAAGATTCCATAAATCAAACTGGAATTTACCTTTTGAAAGTGGACTTCCCCAAAAGG 592079 | || ||| | |||| |||| | | | || || | |||||||| | | | Sbjct 1827 CTCC------CCACATATCATACTGCAGTATTCCCTTGCTGACGGGACTTCCGTCATATG 1880 Query 592080 TTTCATATGGACCAGATTCTTTGGCCATTTGTAATGATTCTGTCATTGTTCCAAAATATA 592139 |||||||||| ||| ||| || |||| | | | | || || |||||||| | Sbjct 1881 TTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATGCGCCAAAATAAA 1940 Query 592140 TAGTTTCAAATATTTTCCTATTAAGATCTCGAGCAATATCAGAATCAAATGGAATTTTAA 592199 | |||||||| |||| | |||| | | || | ||| ||| | || | | | Sbjct 1941 TTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCATAAGGGTATCTCA 2000 Query 592200 ATATAGCAAACACATCGGCTAATCCTTGTACACCAACGCCAATAGGTCTATGGCGTAAAT 592259 || | ||| | ||||| | ||||| ||||||| |||||||||||||| || |||| Sbjct 2001 TTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTATGTCGCAAAT 2060 Query 592260 TTGAAACACGTGTTTTTTCTACTGGATAATAATTTACATCAATAATATTATTTAAATTTC 592319 | || || || || ||||||||||||||||||||| || ||||||||||| Sbjct 2061 TCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTTTATTTAAATTCT 2120 Query 592320 TTGTAATAATTCTTGCGACCTTGTACAATTTATTATAATCAAACTCTGGAACACCGTTTT 592379 | || | ||| ||| ||||| | ||||| ||| | ||||| || | ||| | | Sbjct 2121 TGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGACTTTA--TCCGCTGT 2178 Query 592380 CATGAATAATAAATTTAGGTAAACAAATTGATGACAAATTACAAACTGCATAT-TCATCT 592438 | | ||| || |||| ||| || | | || ||||| || ||| |||||| Sbjct 2179 C-------ACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGC-TATCTCATCT 2230 Query 592439 GCAGATGAGAATTCTACAATTTCACAACAAAGATTTGAGCCATTAATTACGCCTATATTA 592498 | | || |||| ||||||||| ||| ||||| || || || || | || Sbjct 2231 GGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGGTTT 2290 Query 592499 ATCTGATTTGATTTTTGATTGATAGCATCTTTAAACAATATGTATGGTACACCTGTTTCA 592558 || || |||| |||| | |||||| | | || ||||| ||||||||| Sbjct 2291 TGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTGTTTCC 2350 Query 592559 ATTTGTGTTTCCATTATTTTAAACCATAAATCTCT-TGCTTTGATTTGTTTTATAAATCT 592617 | ||||| || || || |||||| || || ||||| | || | | | | Sbjct 2351 ACTTGTGCCTCTATAATCGCAAACCA-AAGGGACTGGGCTTTTACTTTTCTATTCGCGCG 2409 Query 592618 ACCCTCATTTTCATATTTAAGATAAGCTTTATTAAATTCTTCA-CCATATTTTCCTACAA 592676 ||||| || |||||||| ||| | | |||||| | || | ||| | ||| Sbjct 2410 TCCCTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACTTCATGCAA 2469 Query 592677 TATCTGGACA-TTGTGATGGACACATAAGTGACCAATTTTCATCTTTTTCAACACGATCC 592735 | ||||| |||||| || |||||||| ||||||| ||| | |||||| || | | Sbjct 2470 -GCCAGGACACTTGTGA-GGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTC 2527 Query 592736 ATGAAAATATTATTAATCATTAATCCAAGGAATAAATCTCTGGCTCTTTCCGTTTCAGCA 592795 || || | || |||| || || |||||||| | ||||| | ||| Sbjct 2528 ATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCTTCCTTG 2587 Query 592796 CCAGTATTTTTCTTTAGATCAAGGAAGAAAAATATATCACCATGCCAAGGTTCAATAAAT 592855 || || |||||||||| ||| | || ||| |||||| |||||||| || | | Sbjct 2588 CCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTAG 2647 Query 592856 ACCGCAAATGAACCAGCTCTTTTACCACCT 592885 | ||||| | |||| ||||| || ||| Sbjct 2648 ATTGCAAAAGCTCCAGGCCTTTTTCCGCCT 2677 >seq1101 Length=117299 Score = 127 bits (140), Expect = 1e-23 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| |||| || || |||||||| || ||||| ||||||||||| |||||||||| Sbjct 48634 ATGCAGTCGTTACAGTGCCTGCATATTTCAACGATTCACAACGTCAAGCCACTAAAGATG 48693 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || |||||| ||| | || ||||||||| | || || |||||||| ||||| || | Sbjct 48694 CTGGTCAAATTGCTGGTTTGAACGTTTTACGTGTAATCAACGAACCAACTGCAGCAGCTC 48753 Query 474855 TTGCTTATGG 474864 |||||||||| Sbjct 48754 TTGCTTATGG 48763 >seq3053 Length=25279 Score = 107 bits (118), Expect = 1e-17 Identities = 110/140 (79%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||||||||| || || ||||| | ||| ||| |||| ||| |||||||| | | Sbjct 10184 ACGAAGACGAAGAACCAGATGTAATGTTGACTC-CTTTTGAATG-TTATAATCGGACAAT 10127 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | |||||| | |||||||||||||||||| |||||||||||||| ||||||||| Sbjct 10126 GTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATT 10067 Query 480669 CCTTCCTTGTCTTGAATCTT 480688 || || ||||| |||||||| Sbjct 10066 CCCTCTTTGTCCTGAATCTT 10047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266756549338568