Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq3187 111 1e-19 >seq3187 Length=10884 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 75117 TTCAGCATATACTGGGTGCCGGACAAATGCAAGGCTTCATCACGAGCAATCAGTTCGATA 75176 |||| ||||| || ||||| | || || || ||||||||||| |||||||| | |||| Sbjct 5369 TTCAACATATGTTGAGTGCCTGTTAAGTGTAAAGCTTCATCACGTGCAATCAGCTTGATA 5428 Query 75177 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCACCGAAGGCGAAGGAGCAGGCAAAGCTC 75236 || || | || || ||||| | | || || |||| ||||| || ||||||||||| Sbjct 5429 ATTTTAGCATTACCTTCCATTAGCTCACGTTCTGCGAATGCGAATGAACAGGCAAAGCTG 5488 Query 75237 ACGTAGAAGCGGATCGCTTCCAGTGCGTT 75265 || || || ||||| |||||||||||||| Sbjct 5489 ACATAAAATCGGATTGCTTCCAGTGCGTT 5517 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 76612 TGTAGTCGATTCGGTCACGGGTCACGTTAACTTCTTCAGGTCGCCAGAAGAACGCCAGTT 76671 |||| || || ||||| || | |||| |||||||||||| |||||||| |||| || || Sbjct 5988 TGTAATCAATGCGGTCGCGAGAGACGTCAACTTCTTCAGGACGCCAGAAAAACGACAATT 6047 Query 76672 GCTTTTCAATCAGCTTCTCGAACTTCGCATGTTTCTGCTGGTCGTAGCGAGAAACGTTCG 76731 ||||||| |||||||| ||||| | | | || ||||| || ||||| | ||||| Sbjct 6048 GCTTTTCGATCAGCTTTTCGAAAATAGGGTACTTTTGCTGATCATAGCGTGCCACGTTAA 6107 Query 76732 GTGTCTCTCCGAGGAACATCGGCT 76755 | | |||| |||||||||| Sbjct 6108 CAGGTTGGCCGAAAAACATCGGCT 6131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455200007188240