Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq15048 145 4e-30 >seq15048 Length=4365 Score = 145 bits (160), Expect = 4e-30 Identities = 304/448 (68%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 |||||| | |||||| ||||| |||||||||| |||||||||||||| | ||||| Sbjct 2516 TCAACTCGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTA 2575 Query 25982 ATTTCTT-CTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 ||||| ||| ||||| || || |||| ||| || || ||||||||||| |||||||| Sbjct 2576 TGTTCTTCCTTGCCCGTG-TTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCA 2634 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 || ||||| ||||| |||||| || |||||||| || ||||| || ||||| | Sbjct 2635 AGGCTCTAAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCG 2694 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 || | ||||||||| | | |||||| || | || | ||| ||| || || | Sbjct 2695 GGCCACATTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTC- 2753 Query 26161 ATGA-ATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCC 26219 ||| || | ||| | | || || ||| ||| || || || || ||||| Sbjct 2754 CTGATATAGATGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTG 2813 Query 26220 ATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTT 26279 |||| || || || || | | ||||| | ||||| |||| || ||| | Sbjct 2814 ATTTAGATATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAA 2873 Query 26280 TCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATG 26339 |||| | || || ||||| || | ||||| || ||||| | | | ||| | || Sbjct 2874 CCATTGTAAGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTG 2933 Query 26340 TCGGTGTAGCATGAGTATAATATCCTTC 26367 |||||| ||||| ||| || ||| ||| Sbjct 2934 TCGGTGATGCATGCGTAAAAAATCTTTC 2961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252937718543450