Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15048 143 3e-29 >seq15048 Length=4365 Score = 143 bits (158), Expect = 3e-29 Identities = 454/695 (65%), Gaps = 23/695 (3%) Strand=Plus/Minus Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963 ||| || || || ||||||||||| ||||| ||| | || || | || || |||||| | Sbjct 2350 GGAAACAGGTACCCCATATATGCTATACAAAGATTCATGCAATAGAAAAAGCAACCAACA 2291 Query 75964 GAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAA 76023 || | || || || || || ||||| || || |||||| | || || | | Sbjct 2290 AAACCTCGGTACTATAAAATGCAGTAATCTATGTACTGAAATTGTTGAATATTCGGCACC 2231 Query 76024 GGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA-AG 76082 ||||||| || |||||||| | || || || || | || ||||| ||| || Sbjct 2230 AGATGAGATAGCCGTTTGCAACCTCGCTTCGATTGCTTT----AAATATGTTTGTGACAG 2175 Query 76083 AGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATC 76142 | | ||||| | | ||||| | | || ||||||| || || ||||| ||| Sbjct 2174 CGGATAAAGTCTTTGACTTTAAAAAATTAAAAGAGGTCACAAAAATAGTCACCAAGAATT 2115 Query 76143 TAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGC 76202 |||| | | ||||| ||||| |||||| | || ||| || ||| ||| Sbjct 2114 TAAATAAAATAATTGATGTAAATTATTATCCATTACCCGAAGCAAAAAAATCGAATTTGC 2055 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262 |||| |||||||||||| | ||||||||||| || || || | |||||||| | | Sbjct 2054 GACATAGACCTATTGGTATTGGTGTTCAAGGGCTGGCCGACGCTTTTATTTTAATGAGAT 1995 Query 76263 ACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATC 76322 || | | ||| || | || ||||| | ||||||||||| || ||| Sbjct 1994 ACCCTTATGAAAGTGAGAACGCGTTTCTTTTGAATAAGCAAATCTTTGAAACAATTTATT 1935 Query 76323 A---CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACAT 76379 ||||| ||||||| |||||||| |||| ||| || | ||||| |||| Sbjct 1934 TTGGCGCAT---TGGAGGCAAGTTGTGAGCTGGCAGAAAAATTTGGACCATATGAAACAT 1878 Query 76380 TTGAGGGTTCTCCCGCGTCC-CAAGGGG-TGCTTCAGTTTGATATGTGGGAAGGTGAAAC 76437 ||| || ||||| || |||||| | || |||| ||||||||||| || | | | Sbjct 1877 ATGACGGAAGTCCCG--TCAGCAAGGGAATACTGCAGTATGATATGTGGGGAG-TAACTC 1821 Query 76438 CAAGCTCAACTACG----ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 76493 | | ||| | | | ||| || | | || | || ||| | | ||| | Sbjct 1820 CTA---CAAATTTGTGGGATTGGATTGATTTAAAAAATAAAATAAAGAAATATGGTATAA 1764 Query 76494 GTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 76553 | ||| ||| | ||||||||||||||||||| |||||||| || || ||||| |||| Sbjct 1763 GGAACTCTCTACTTGTGGCACCAATGCCAACAGCATCCACCGCGCAGATTTTGGGAAATA 1704 Query 76554 ATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 | |||| |||||||| || || |||| || ||| Sbjct 1703 ACGAATCTTTTGAACCGTATACGTCAAATATTTAC 1669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596322277158080