Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq3187 223 2e-53 >seq3187 Length=10884 Score = 223 bits (246), Expect = 2e-53 Identities = 419/614 (68%), Gaps = 7/614 (1%) Strand=Plus/Minus Query 9439 TGGTGGTGAAGCGGTACATACTGGTTGTATCCCATTCTACAAACACTTCCAAACAGCAGT 9498 ||| |||||||| | || || || ||||| || |||||||| |||||||| || || || Sbjct 7731 TGGCGGTGAAGCTTTCCACACAGGCTGTATTCCGTTCTACAAGCACTTCCAGACTGCGGT 7672 Query 9499 GAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGCGGCAACGGTATTCTACCCAATGTG 9558 |||| ||| ||||| ||||| ||||| || || || || |||| |||||||| || Sbjct 7671 TAAATCTTGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTG 7612 Query 9559 GCACCTAGA-GTACAAATCACTAATCGTACTCAAGAACAACCGTGGTATCGAAGAAAACC 9617 |||||| || || ||| | || | || || || |||||||| || | |||| |||| Sbjct 7611 GCACCTTGAAGTTGAAAGC-CTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACC 7553 Query 9618 GTGTACGTCATATGGACTACGGTGTACAAATTAATGGCCTGATGTATAAGCGTCTGCTGT 9677 | || || ||||||||||||||||| ||| || | ||| || | Sbjct 7552 GAGTTCGCCATATGGACTACGGTGTGCAATNNNNNNNNNNN---TACGAACGTTTGATTA 7496 Query 9678 CTGGTCAGAACATCACTTTATTCTCACCT-CATAGTGTACCGGGTCTATACGATGCATAC 9736 || ||||||| ||||| ||| || | ||| || ||||| || ||||||| | Sbjct 7495 AGAACCAAGACATCACCCTATTCAGCCCTTCAGA-TGTCCCAGGTCTGTATGATGCATTC 7437 Query 9737 TTCGAAGACCAAGATAAGTTCGAGCGACTGTACACCAAAGCGGAATCTGATCCATCAATC 9796 || | |||||||||| | ||||| || | || || ||| ||| | ||| Sbjct 7436 TTTGCAGACCAAGATGAATTCGAACGTTTATATGTGCAATATGAACAAGATGAGACTATC 7377 Query 9797 GAAAAAGACACAATCTCTGCTAAGGAAGCATTCAGCATACTAATGCAAGAGCGTGCTTCT 9856 ||| || | || || ||| || | |||||||||||||| || Sbjct 7376 CGCAAATCCAGCGTTAAAGCAGTTGAGTTGTTCTCATTAATGATGCAAGAGCGTGCGTCA 7317 Query 9857 ACAGGTCGCATCTACATTCAGCACGTAGATCACTGTAACATTAACGGTCCTTTCGATGAG 9916 ||||| || || |||||||| |||| || |||||||| | | | || || || Sbjct 7316 ACAGGCCGAATTTACATTCAAAACGTTGACCACTGTAATACGCATAGCCCATTTGACCCA 7257 Query 9917 CGCGTTGCACCAGTACGCCAATCAAACCTATGTATGGAAATCGCACTACCAACCAAACCG 9976 | ||||| || || || ||||| ||||| ||| | |||||||| || ||||| ||||| Sbjct 7256 CAGGTTGCCCCTGTCCGTCAATCTAACCTGTGTTTAGAAATCGCGCTGCCAACTAAACCA 7197 Query 9977 TTGAATAACGTCGATGATCCTGATGGTGAAGTTGCGCTATGTACTCTATCTGCATTCAAC 10036 |||||||| || ||||| || |||||| |||| ||||||| || |||||||| ||| Sbjct 7196 TTGAATAATATCAATGATGAAGAAGGTGAAATTGCATTATGTACACTGTCTGCATTTAAC 7137 Query 10037 TTGGGTAAGATTGA 10050 || ||| |||||| Sbjct 7136 TTAGGTGCGATTGA 7123 Score = 192 bits (212), Expect = 4e-44 Identities = 341/500 (68%), Gaps = 37/500 (7%) Strand=Plus/Minus Query 11167 CTCGATCCAAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGT 11226 ||| || || || || ||||| || |||| || ||||| | | || | || || | Sbjct 5866 CTCTATTCAGGGTCGCAGCCCTAACGTGGCATTACTGCCACTAATTTCGATTCCTGAGCT 5807 Query 11227 CGAAACTTGGGTAGAAACGTGGAGCTTCAGCGAAACCATCCACTCTCGTTCATACACACA 11286 ||||| ||||| ||||| ||| ||| |||||||||||||| ||||||||||| || Sbjct 5806 GGAAACCTGGGTGGAAACATGGGCATTCTCTGAAACCATCCACTCACGTTCATACACTCA 5747 Query 11287 CATCATTCGCAATATTGTCAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAA 11346 || || || ||||| || |||||||| ||| | || || ||| | ||||| ||| | Sbjct 5746 TATTATCCGTAATATCGTGAATGACCCGGCGATTATTTTTGACGATATCGTTGAAAATGA 5687 Query 11347 GCACATCCTAGAGCGAGCTAAAGATATTGCTCGTTACTACGACGATCTCATCTTGGCATG 11406 | || || | || || |||||||| || |||| || || || |||||| | ||| Sbjct 5686 AGAAATTTTAAAACGTGCGAAAGATATCTCTGGTTATTATGATGACCTCATC--GAAATG 5629 Query 11407 --CAAAGAG-----CATG------------------AGCTA-AACGGCAAACACA----- 11435 ||| | |||| | || ||||| ||||| | Sbjct 5628 ACCAACTATTATCACATGTTCGGTGAAGGCACACACAACTGTAACGGAAAACAAATCACC 5569 Query 11436 ----CAATGCGCGACCTAAAGAAAAAGTTGTACTTGTGCATGATGGCTGTTAATGTATTA 11491 || |||| | || || ||| | || ||| ||||| | ||| |||||| | | | Sbjct 5568 GTTTCATTGCGTGCGCTGAAAAAACAATTATACCTGTGCTTAATGAGTGTTAACGCACTG 5509 Query 11492 GAAGCAGTTCGTTTCTACGTTAGTTTCGCTTGTTCATTTGCATTCGCTGAACGCGAGATT 11551 |||||| | || || || || || || || |||||||| |||||||| ||||| ||| | Sbjct 5508 GAAGCAATCCGATTTTATGTCAGCTTTGCCTGTTCATTCGCATTCGCAGAACGTGAGCTA 5449 Query 11552 ATGGAAGGTAATGCTAAAATCATCAAGCTTATTGCTCGTGATGAAGCACTACACCAAAGC 11611 |||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| || Sbjct 5448 ATGGAAGGTAATGCTAAAATTATCAAGCTGATTGCACGTGATGAAGCTTTACACTTAACA 5389 Query 11612 GGTACACAGCACATGCTGAA 11631 || || || || ||| |||| Sbjct 5388 GGCACTCAACATATGTTGAA 5369 Score = 107 bits (118), Expect = 1e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 10939 AAAAAACGACCAACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCCGTTA 10998 |||||| ||||| || ||||||||||||| ||||||||| | |||||||| | || || Sbjct 6151 AAAAAATGACCAGATGCAGGAGCCGATGTTTTTCGGCCAACCTGTTAACGTGGCACGCTA 6092 Query 10999 CGACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTG 11058 || || || || | | |||| || || || | | |||||| | || || ||||| Sbjct 6091 TGATCAGCAAAAGTACCCTATTTTCGAAAAGCTGATCGAAAAGCAATTGTCGTTTTTCTG 6032 Query 11059 GCGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTACA 11102 |||||| ||||||||||| || || | ||||| || || |||| Sbjct 6031 GCGTCCTGAAGAAGTTGACGTCTCTCGCGACCGCATTGATTACA 5988 Score = 89.7 bits (98), Expect = 4e-13 Identities = 227/341 (67%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 10508 TCTCAGGTATCTAACGCAACAAACGGCATCGAACCACCTCGTGGCTACATGTCAG--TTA 10565 || ||| | ||||||||||| || || || || ||||| || ||||||| |||| ||| Sbjct 6612 TCACAGATTTCTAACGCAACCAATGGTATTGAGCCACCGCGCGGCTACA--TCAGTATTA 6555 Query 10566 AGCAGTCGAAGGATGGCATCTTAAAACAAATCGTACCGGGTTATGATAAATACAAAGACC 10625 | ||| || || ||||||||| ||| | || || | ||| || || |||| Sbjct 6554 AAGCGTCAAAAGACGGCATCTTACGCCAAGTAGTGCCAGATTACGAAAACCTGAAAGGGG 6495 Query 10626 AATACGAGTTACTATGGAATATCAAAGACAACACTGGTTACTTGGAATTGGTTGCCATCA 10685 || || | ||||| | || | | || || ||| || || | |||| || | Sbjct 6494 CTTATGAACTGTTATGGCAAATGCCATCTATCAGCGGCTACCTGCAACTCGTTGGTATTA 6435 Query 10686 TGCAGAAGTTTGTGGATCAGGCTATTTCAGCAAACACTAACTACGACCCAGAAAACTACC 10745 ||||||| ||| | || ||| | ||||| |||||||| ||||| |||||| | | | Sbjct 6434 TGCAGAAATTTATCGACCAGTCGATTTCTGCAAACACAAACTATGACCCA-ACTCGTTTC 6376 Query 10746 CAGA-AAGTAAGGTTCCAATCAAAAAGTTATTGCAAGATTTGGTGACATGTTATAGACTC 10804 ||| | || || ||||| || | || | ||||||| || |||| | Sbjct 6375 GAGAGCGGCAAAGTACCAATGAACCAATTGCTAAAAGATTTATTGCTCGCCTATAAGTTT 6316 Query 10805 GGCATCAAGACACTGTACTACCACAACACACGAGATGGTGC 10845 || | || ||||| |||||||| ||||| || |||||||| Sbjct 6315 GGTGTGAAAACACTTTACTACCATAACACCCGTGATGGTGC 6275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342834166750154