Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3053 127 4e-24 >seq3053 Length=25279 Score = 127 bits (140), Expect = 4e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | |||||| | || | |||||| || | ||| ||| || || |||||||| | Sbjct 10190 ACCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGA-ATGTTATAATCGG 10132 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | ||||| ||| |||| || ||||| || |||||||| |||| | |||||||| || | Sbjct 10131 ACAATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAG 10072 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||| ||||| || || || || ||| ||||| || | || || | ||| | Sbjct 10071 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGA 10012 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | |||| || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 10011 CCTCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCATTTT 9960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984061655684100