Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq15048 190 6e-43 seq3100 114 4e-20 seq9178 100 8e-16 >seq15048 Length=4365 Score = 190 bits (210), Expect = 6e-43 Identities = 776/1207 (64%), Gaps = 21/1207 (2%) Strand=Plus/Plus Query 155323 CAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTAAATG 155382 ||||||||||||| |||||||| | ||||| | || | |||| | | | | Sbjct 1932 CAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCATAAG 1991 Query 155383 CGATATC-CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGA 155441 | |||| ||| | ||| | |||||| | || ||||| |||||||| | || | | Sbjct 1992 GG-TATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTA 2050 Query 155442 TGCCTGTAATTGCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTT 155500 || | |||| | ||| |||| || ||| ||| |||| |||||||| || || Sbjct 2051 TGTCGCAAATTCGATTTTTTTG-CTTCGGGTAATGGATAATAATTTACATCAATTATTTT 2109 Query 155501 ATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTT 155560 ||||||||| | | || || || || ||| |||||| | ||||||| ||| Sbjct 2110 ATTTAAATTCTTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGACTTT 2169 Query 155561 ATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT- 155619 |||| | | ||||||||| | | |||| || || || || || || || |||| | Sbjct 2170 ATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCTCATC 2229 Query 155620 TGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAAT 155679 || | || ||||| ||||| ||| || || ||| | || || || || | | Sbjct 2230 TGGTGCCGAA-TATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGGT 2288 Query 155680 TCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCT 155739 | | ||||| ||| || || || | ||| |||||||| || |||||||| ||||| | Sbjct 2289 TTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTGTTT 2348 Query 155740 CCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATC 155799 ||| ||||| || | |||| | ||| ||| |||| || | || | || | Sbjct 2349 CCACTTGTGCCTCTATAATCGCAAACCAAAGGGACTGGGCTTTTACTTTTCTATTCGCGC 2408 Query 155800 TGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCA 155859 || || ||||||||| ||||| || | ||| ||| || ||| || Sbjct 2409 GTCCCTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACTTCATGCA 2468 Query 155860 GTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCA 155919 ||||| ||||| | ||||| | || |||||| || ||| | || || | || Sbjct 2469 AGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTCA 2528 Query 155920 TAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCG 155978 |||| | ||| ||| | |||||| || | || | || || || || || | | Sbjct 2529 TAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGT-TCTTCCTTG 2587 Query 155979 CC-GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATA 156037 || ||| || ||| || || || || || |||||||| || ||||| | || Sbjct 2588 CCCGTGTTT-TTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTA 2646 Query 156038 CATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATT 156094 || |||||| ||| ||| || ||| || || || || || || || || || Sbjct 2647 GATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACATTGTT 2706 Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA 156154 ||| || | |||||| || | | || || ||||| ||||| ||||| ||| | Sbjct 2707 GAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATAGATGT 2766 Query 156155 ACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214 || | || | ||||| || || ||||||||| || | ||||||| || Sbjct 2767 GCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGATATCAT 2826 Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAG 156274 |||||||| | || | || |||||||||||||| ||||| | |||||| ||||| Sbjct 2827 AGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGTAAGTAG 2886 Query 156275 ATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 |||| || | ||| ||||| |||| |||| || ||||| |||| |||||| Sbjct 2887 GAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGATGCATG 2946 Query 156335 AATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTC----TCAAGATTAG 156390 ||||| | | | |||| ||| | ||| || || ||| | | || | || | Sbjct 2947 CGTAAAAAATCTTTCCGACAGATAGTTGTAGGTTTC---AAT-TGCGGAATCTATATCAT 3002 Query 156391 ACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTC 156450 || ||||||| ||||| ||||||||| |||| |||||||| | || | || | Sbjct 3003 CACCATGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTTGC 3062 Query 156451 CATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAA 156510 | | ||| || | || | ||||| || |||||||| || ||||||| | || Sbjct 3063 CGTTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGCCAA 3122 Query 156511 AATCACG 156517 ||||||| Sbjct 3123 AATCACG 3129 >seq3100 Length=5382 Score = 114 bits (126), Expect = 4e-20 Identities = 203/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||||||||| || || || ||| | || || || || ||| Sbjct 1786 TCCATAGCCTTGATCAGACGACGCTGGATGTAGCCCGTTTCGGCGGTCTTCACCGCAGTA 1845 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||||||||| |||||||| | | ||| || | || Sbjct 1846 TCGATGAGACCCTCACGACCACCCATCGCATGGAAATAGAACTCGGAGGGGGTCAAACCG 1905 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 | | | ||||| |||| ||||| || | || |||||| || ||||||| |||| | Sbjct 1906 GCCAGATAGGAGTTCTCCACGAAGCCTCTCGACTCGGGACCGTAATCGTC---CTTGATG 1962 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || |||| || | || ||||||| || |||||||| || || ||||||||| Sbjct 1963 AAATGCGGCAAAGTGCGCTTGCGGAAGCCGTACGGTATACGCTTGCCCTCGACGTTCTGC 2022 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || |||| || | || | |||||| || || | | |||||| ||||| Sbjct 2023 TGGCCCACACAGGCGATGACCTGCGAGATGTTGATGTTGGAGCCCTTCGAGCC 2075 >seq9178 Length=5021 Score = 100 bits (110), Expect = 8e-16 Identities = 179/258 (69%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| || ||||| ||| |||||||| | || ||| | ||| || | || | || Sbjct 3515 GCGATGAGGCCACAGAAATTGCACACATGTATGCGGTACGGATCGGAGACCTCGAAGAGG 3574 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || | ||| | | || ||||| || || |||||||||||||| |||||| Sbjct 3575 CGCTCGCGCAAGAACTGTGCCGCTCCGTGGGATATTTGGCAATCACGCTCCATCTCACCG 3634 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 ||||| |||||||| || || ||||| ||||| |||||||| ||| | || Sbjct 3635 AAACGCAGACCACCGTCACGGGCCCTGCCCTCCATGGGCTGACGCACCAGAATCTGCACG 3694 Query 251584 GGACCGATGGAGCG-GCTA-TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGA 251641 || ||| ||||| || | || ||| || | |||||||||||||||||||||||| Sbjct 3695 GGGCCG--CGAGCGCGCGAGTGGATCTTGTCGTCCACCATATGCTTGAGACGCTGGTAGT 3752 Query 251642 ATGCGGGACCGATGAAGA 251659 | | ||| || | ||||| Sbjct 3753 AGGTGGGTCCCAGGAAGA 3770 Score = 86.0 bits (94), Expect = 2e-11 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| |||| |||||||| ||||| || ||||||||||||||||||||||| ||| Sbjct 4055 TGGCCGATTGTCATACGGGATGGAATGGCGTGGGGATTGATGATGATGTCGGGGGCCAGG 4114 Query 251899 CCATCAGCA-GTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTT 251956 || || ||| ||||| | |||||||| || | | || || | ||| || || || | Sbjct 4115 CCTTC-GCATGTGAACGCCATATCCTCTTGC-CGGTACTGAATACCACACGTACCTTTCT 4172 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAA 252016 | |||||||| ||| |||||| || || || || ||| || || | |||| Sbjct 4173 GACCGTGACGCGAAGCGAACTTGTCGCCGATCTGCGGTATGCGCACGGAGCGCACACGAA 4232 Query 252017 CCTTACAGAAGTTGTAACCATCACCGTT 252044 ||| ||||| ||||| || || | ||| Sbjct 4233 TCTTGCAGAACTTGTAGCCCTCGCTGTT 4260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471192166748942