Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq3187 156 5e-33 >seq3187 Length=10884 Score = 156 bits (172), Expect = 5e-33 Identities = 232/331 (70%), Gaps = 15/331 (5%) Strand=Plus/Minus Query 41839 TGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACAGCGGT 41898 ||| |||||||| | || |||||| || ||||||| || || | ||||| ||||| Sbjct 7731 TGGCGGTGAAGCTTTCCACACAGGCTGTATTCCGTTCTACAAGCACTTCCAGACTGCGGT 7672 Query 41899 TAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTATTATCCGATCTG 41958 |||||| || || ||||||||||| |||||||||||||| || || | ||| || || || Sbjct 7671 TAAATCTTGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTG 7612 Query 41959 GCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAAAACAACCG 42018 ||| | |||||||||| |||| | || |||||||||||| || |||||| ||||| Sbjct 7611 GCACCTTGAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCG 7552 Query 42019 TATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAACGTTTGATGAA 42078 | || || |||| || || || || || |||||||||| || Sbjct 7551 AGTTCGCCATATGGACTACGGTGT---GCAATNNNNNNNNNNNTACGAACGTTTGATTAA 7495 Query 42079 TAACGATTACATCACTCTGTTCAGCCCT---GATGTTGCTAACGATCGTCTGTATGATGC 42135 ||| | ||||||| || ||||||||| ||||| | ||||||||||||| Sbjct 7494 GAACCAAGACATCACCCTATTCAGCCCTTCAGATGT------CCCAGGTCTGTATGATGC 7441 Query 42136 GTTCTATCAAGCGGATCAGACTGAATTCGAA 42166 |||| | || || || |||||||||| Sbjct 7440 ATTCTTT---GCAGACCAAGATGAATTCGAA 7413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563564663278320